ViewGene

Locus Name:
GeneID:
Location:

GeneID:3207
TrivialName: PA14_53330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53330
PAO1 Ortholog Locus:PA0846
Sequence Length:741
Protein Length:246
Start: 4726683
Stop: 4727423
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04235.1|AE004519_6 (AE004519) probable sulfate uptake protein [Pseudomonas aeruginosa PAO1]
Identities = 244/246 (99%), Positives = 246/246 (100%)
Sequence:
ATGCCAGCCCTGAGCGGCCCGCAATACCTCGGCGAAGGCCTGAAGCTGATCATGCGTCCCGGCCTGCGCCTG
TTCGTGCTGATCCCCCTGACCCTCAACCTGCTGGTGTTCGCCCTGCTGATCGGCTTCGCGATGCAGCAGTTC
AGCCACTGGGTCGACCTGCTGATGCCCAGCCTGCCCGACTGGCTGAGCTTCCTGCAGTACATCGTCTGGCCG
TTGTTCGTCCTGCTGGTGCTGGTGATCGTGTTCTTCACCTTCACCATGGTCGCCAATATCATCTCCGCGCCG
TTCAACGGCTTCCTCTCGGAAAAGGTCGAGGTGGTGGTTCGCGGCCGCGACGACTTCCCGCCGTTCAGCTGG
GCCGAACTGCTGGCGATGATCCCGCGCACCATGGGTCGCGAGATGCGCAAGCTCGCCTACTTCCTGCCGCGC
GCGCTGGTGCTGCTGGTGCTGAGCTTCGTGCCCGGGGTCAACCTGATCGCCACGCCGCTGTGGATCCTCTTC
GGCATCTGGATGATGGCGGTGCAGTACATCGACTATCCGGCGGACAACCACAAGCTCGGCTGGAACGAGATG
CTCGCCTGGCTGCGCAGCAAGCGCTGGGCGTGCATGGGTTTCGGCGGGATGACCTACCTGGCGCTGCTGATC
CCGCTGGTCAACCTGGTCATGATGCCCGCCGCCGTCGCCGGCGCCACCCTGTTCTGGGTCCGCGAGGAAGGC
GAGAAGGCGCTGGTGAAATAA
Translation:
MPALSGPQYLGEGLKLIMRPGLRLFVLIPLTLNLLVFALLIGFAMQQFSHWVDLLMPSLPDWLSFLQYIVWP
LFVLLVLVIVFFTFTMVANIISAPFNGFLSEKVEVVVRGRDDFPPFSWAELLAMIPRTMGREMRKLAYFLPR
ALVLLVLSFVPGVNLIATPLWILFGIWMMAVQYIDYPADNHKLGWNEMLAWLRSKRWACMGFGGMTYLALLI
PLVNLVMMPAAVAGATLFWVREEGEKALVK*
AnnotationID:3215GeneID:3207
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 16:04:55
Gene Name:
Confidence Code:3
GeneProduct:probable sulfate uptake protein
Cell Localization:()
Synonyms:PA0846
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:cysZ
Functional Category Confidence Code:5
COGs:COG2981, pfam04401
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG2981, CysZ, Uncharacterized protein involved in cysteine biosynthesis.  Score: 246, 4e-66
pfam04401, DUF540, Protein of unknown function (DUF540). Score: 181, 1e-46
Genomic Context:
Comment:
ReferenceID:6417
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23559
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3207

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5174 PA0846_tr translation of PA0846 246 99.18 99.99 0 1277.0
145449 gb|AAG04235.1|AE004519_6 (AE004519) probable sulfate uptake protein [Pseudomonas aeruginosa PAO1] 246 99.18 99.99 0 1277.0
145451 gb|AAN66410.1|AE016268_9 (AE016776) cysZ protein [Pseudomonas putida KT2440] 248 68.95 81.85 8 950.0
145450 gb|AAO54704.1| (AE016860) cysZ protein [Pseudomonas syringae pv. tomato str. DC3000] 253 68.77 81.42 7 956.0
145452 gb|AAM85061.1|AE013752_2 (AE013752) cysZ protein [Yersinia pestis KIM] 249 42.57 61.84 8 548.0
GC ORFID: 46209How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0846Glimmer Score:
Start: 227224Stop: 226484
Length: 741
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA0846 translation of PA0846Homolog Bit Score 496.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene5038 (ORF: BLASTX 379.0), t_PA0846 (ORF: GLIMMER)
GC ORF Sequence
ATGCCAGCCCTGAGCGGCCCGCAATACCTCGGCGAAGGCCTGAAGCTGATCATGCGTCCCGGCCTGCGCCTG
TTCGTGCTGATCCCCCTGACCCTCAACCTGCTGGTGTTCGCCCTGCTGATCGGCTTCGCGATGCAGCAGTTC
AGCCACTGGGTCGACCTGCTGATGCCCAGCCTGCCCGACTGGCTGAGCTTCCTGCAGTACATCGTCTGGCCG
TTGTTCGTCCTGCTGGTGCTGGTGATCGTGTTCTTCACCTTCACCATGGTCGCCAATATCATCTCCGCGCCG
TTCAACGGCTTCCTCTCGGAAAAGGTCGAGGTGGTGGTTCGCGGCCGCGACGACTTCCCGCCGTTCAGCTGG
GCCGAACTGCTGGCGATGATCCCGCGCACCATGGGTCGCGAGATGCGCAAGCTCGCCTACTTCCTGCCGCGC
GCGCTGGTGCTGCTGGTGCTGAGCTTCGTGCCCGGGGTCAACCTGATCGCCACGCCGCTGTGGATCCTCTTC
GGCATCTGGATGATGGCGGTGCAGTACATCGACTATCCGGCGGACAACCACAAGCTCGGCTGGAACGAGATG
CTCGCCTGGCTGCGCAGCAAGCGCTGGGCGTGCATGGGTTTCGGCGGGATGACCTACCTGGCGCTGCTGATC
CCGCTGGTCAACCTGGTCATGATGCCCGCCGCCGTCGCCGGCGCCACCCTGTTCTGGGTCCGCGAGGAAGGC
GAGAAGGCGCTGGTGAAATAA