ViewGene
Locus Name:
GeneID:
Location:

GeneID:3206
TrivialName: PA14_59650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59650
PAO1 Ortholog Locus:
Sequence Length:756
Protein Length:251
Start: 5308021
Stop: 5308776
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84177.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 251/251 (100%), Positives = 251/251 (100%)
Sequence:
ATGATCAGAACCGTATCGCTCCTGTCCGGCCTGATGCTGCTGCTGAGCTATCCCGCAGCCGGCCAGGAGGCG
GCGGCAAGCCGAGAGGCCAGCAGCCAACTGTCCGGTAGCCAACTCGGCACGCTGAAACAACAGACATCTCAG
AGCGACCTGGCCCAGGAGTGGGGACTGAACCAACAGGAATGGACCCGCTACCAGACGCTCATGCAAGGCCCC
CGGGGCGCTTACTCGCCTGGTATTGATCCGCTGACCGCGCTGGGCATCGAGGCGCGATCGGCAGAGGAACGG
CGGCGGTATGCCGATCTACAGGTCCAGGCCGAACGGCGCCGGGTCGAGAAGGAACTCGCCTACCAGCGCGCA
TACGACGAAGCCTTCGCCCGCGCCTATCCAGGCGAGGGGGTGATCCGCCTCACCGAAAGCAGCACAGCCAAC
CCGTCGGGCACGCCGAACATGAGCCCAGCGTTGCAGAGCAGCGGGCGCCTGGCCCTGTTCGTCCAGGACAAC
TGCACCGCCTGCATCCAGCGGGTCCGCGACCTGCAACATGCAGAAAAGGAGTTCGACCTCTACTTCGTCGGT
AGCCAGAACGACGCAGAGCGAGTGCGGCGCTGGGCAATCCTCGCCGGCATCGACCCGAAGAAGGTTCGCAGC
AAGCAGATCACGCTCAATCATGACGAGGGCCGCTGGATGGCCCTAGGACTGGGCGGAGCCCTTCCCGCCCTG
GTACAGGAGGTGAACGGCCGATGGCAACGTCTGTAG
Translation:
MIRTVSLLSGLMLLLSYPAAGQEAAASREASSQLSGSQLGTLKQQTSQSDLAQEWGLNQQEWTRYQTLMQGP
RGAYSPGIDPLTALGIEARSAEERRRYADLQVQAERRRVEKELAYQRAYDEAFARAYPGEGVIRLTESSTAN
PSGTPNMSPALQSSGRLALFVQDNCTACIQRVRDLQHAEKEFDLYFVGSQNDAERVRRWAILAGIDPKKVRS
KQITLNHDEGRWMALGLGGALPALVQEVNGRWQRL*
AnnotationID:3214GeneID:3206
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 20:08:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6415




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23557




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3206
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
145441
                           gb|AAP84177.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           251
                           99.99
                           99.99
                           0
                           1279.0
     

     
     
145442
                           gb|AAN62162.1|AF440523_69
                           (AF440523) hypothetical protein [Pseudomonas aeruginosa]
                           252
                           52.38
                           65.87
                           8
                           627.0
     

     
     
145443
                           emb|CAE92925.1|
                           (AJ617740) hypothetical protein [Pseudomonas putida]
                           252
                           52.38
                           65.87
                           14
                           624.0
     

     
     
145444
                           gb|AAM37108.1|
                           (AE011862) hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           263
                           47.14
                           61.21
                           21
                           585.0
     

     
     
145445
                           gb|AAN62293.1|AF440524_80
                           (AF440524) hypothetical protein [Pseudomonas aeruginosa]
                           259
                           47.10
                           60.23
                           26
                           563.0
     

     






      

          
GC ORFID: 46208How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL051Glimmer Score: 

          
Start: 4571700Stop: 4572455

          
Length: 756


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RL051 251 Homolog: XAC2255 / Hypothetical protein / X.axonopodis pv. citri / 306 (AAM37108) translation of RL051Homolog Bit Score 497.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1629 (ORF: BLASTX 262.0), t_RL051 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCAGAACCGTATCGCTCCTGTCCGGCCTGATGCTGCTGCTGAGCTATCCCGCAGCCGGCCAGGAGGCG 
GCGGCAAGCCGAGAGGCCAGCAGCCAACTGTCCGGTAGCCAACTCGGCACGCTGAAACAACAGACATCTCAG 
AGCGACCTGGCCCAGGAGTGGGGACTGAACCAACAGGAATGGACCCGCTACCAGACGCTCATGCAAGGCCCC 
CGGGGCGCTTACTCGCCTGGTATTGATCCGCTGACCGCGCTGGGCATCGAGGCGCGATCGGCAGAGGAACGG 
CGGCGGTATGCCGATCTACAGGTCCAGGCCGAACGGCGCCGGGTCGAGAAGGAACTCGCCTACCAGCGCGCA 
TACGACGAAGCCTTCGCCCGCGCCTATCCAGGCGAGGGGGTGATCCGCCTCACCGAAAGCAGCACAGCCAAC 
CCGTCGGGCACGCCGAACATGAGCCCAGCGTTGCAGAGCAGCGGGCGCCTGGCCCTGTTCGTCCAGGACAAC 
TGCACCGCCTGCATCCAGCGGGTCCGCGACCTGCAACATGCAGAAAAGGAGTTCGACCTCTACTTCGTCGGT 
AGCCAGAACGACGCAGAGCGAGTGCGGCGCTGGGCAATCCTCGCCGGCATCGACCCGAAGAAGGTTCGCAGC 
AAGCAGATCACGCTCAATCATGACGAGGGCCGCTGGATGGCCCTAGGACTGGGCGGAGCCCTTCCCGCCCTG 
GTACAGGAGGTGAACGGCCGATGGCAACGTCTGTAG