ViewGene

Locus Name:
GeneID:
Location:

GeneID:3205
TrivialName: PA14_63070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63070
PAO1 Ortholog Locus:PA4769
Sequence Length:774
Protein Length:257
Start: 5626986
Stop: 5626213
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08155.1|AE004890_8 (AE004890) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 257/257 (100%), Positives = 257/257 (100%)
Sequence:
ATGGAATTTGGTCAGGTCAGGCAGCGCCGTCTGTCGGATGACATCGTTGCGCAACTGGAGGCGATGATCCTG
GAGGGCACGCTGAAGTCCGGCGAGCGGCTGCCCGCCGAGCGCGTGCTTGCCGAGCAGTTCGGGGTTTCCCGG
CCGTCGCTGCGCGAGGCGATCCAGAAACTGGTGGCGAAGGGGCTGCTGGTCAGCCGCCAGGGTGGCGGCAAC
TATGTGACCGAATCGCTGGGCGCGACTTTCAGCGATCCGCTGCTGCACCTGCTGGAGGGTAACCCGGAGGCC
CAGCGCGACCTGCTGGAGTTTCGCCACACGCTGGAAGGGTCCTGTGCCTACTACGCGGCGCTGCGTGCGACC
TCCCTCGATCACCAGCGCCTGACCGAGGCCTTCGAGGCGCTCCAGGCCTGCTATGCGCGCAACGACCAGGTC
AGCGCGGAAGAGGGCGCCGCCGACGCGCGCTTCCACCTGGCGATCGCCGAGGCCAGCCACAACACCGTGCTG
CTGCACACCATCAAGGGCCTGTTCGACTTGCTGCGGCGCAACGTGGTGACCAATATCGGCGGGATGTACGCG
CAGCGCACGGAAACCCGCGCGCAACTGATGGAGCAGCACCAGCGCCTATACGACGCGATCATCAGCGGTCAG
GCGGAGCTGGCCCGGGAGGTGTCCAACCAGCACATCCACTATGTGCAGGAGGTCCTGGCGGAGGTCCAGGAA
GAGGCGCGCAGGATGAAGCGCTCGCAGCGCCGGCGCAGCGTGCAGGAGGACTAG
Translation:
MEFGQVRQRRLSDDIVAQLEAMILEGTLKSGERLPAERVLAEQFGVSRPSLREAIQKLVAKGLLVSRQGGGN
YVTESLGATFSDPLLHLLEGNPEAQRDLLEFRHTLEGSCAYYAALRATSLDHQRLTEAFEALQACYARNDQV
SAEEGAADARFHLAIAEASHNTVLLHTIKGLFDLLRRNVVTNIGGMYAQRTETRAQLMEQHQRLYDAIISGQ
AELAREVSNQHIHYVQEVLAEVQEEARRMKRSQRRRSVQED*
AnnotationID:3213GeneID:3205
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 11:11:18
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, GntR family
Cell Localization:()
Synonyms:pdhR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative transcriptional regulator for pyruvate dehydrogenase complex
Functional Category Confidence Code:5
COGs:COG2186,COG1802
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN03802.1|AF490983_2 (AF490983) probable transcription regulator [Azotobacter
           vinelandii]
          Length = 258

 Score =  380 bits (977), Expect = e-105
 Identities = 198/257 (77%), Positives = 221/257 (85%), Gaps = 1/257 (0%)

>gb|AAN70306.1|AE016671_7 (AE016791) transcriptional regulator, GntR family [Pseudomonas
           putida KT2440]
          Length = 255

 Score =  374 bits (961), Expect = e-103
 Identities = 198/252 (78%), Positives = 218/252 (86%), Gaps = 1/252 (0%)

>gb|AAN78636.1|AE016755_136 (AE016755) Pyruvate dehydrogenase complex repressor [Escherichia
           coli CFT073]
          Length = 265

 Score =  221 bits (562), Expect = 4e-57
 Identities = 120/251 (47%), Positives = 170/251 (67%), Gaps = 3/251 (1%)

Structural Features:
COG2186, FadR, Transcriptional regulators [Transcription]
CD-Length = 241 residues, 100.0% aligned
Score =  172 bits (438), Expect = 3e-44
Identities = 100/248 (40%), Positives = 137/248 (55%), Gaps = 10/248 (4%)

COG1802, GntR, Transcriptional regulators [Transcription]
CD-Length = 230 residues,  93.5% aligned
Score = 97.9 bits (243), Expect = 1e-21
Identities = 72/238 (30%), Positives = 105/238 (44%), Gaps = 23/238 (9%)
Genomic Context:
Comment:
ReferenceID:6413
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23555
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37674
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3205_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3205

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5173 PA4769_tr translation of PA4769 257 99.99 99.99 0 1280.0
145405 gb|AAG08155.1|AE004890_8 (AE004890) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 257 99.99 99.99 0 1280.0
145407 gb|AAN70306.1|AE016671_7 (AE016791) transcriptional regulator, GntR family [Pseudomonas putida KT2440] 258 76.74 84.49 4 959.0
145406 gb|AAN03802.1|AF490983_2 (AF490983) probable transcription regulator [Azotobacter vinelandii] 260 76.53 85.38 5 981.0
145412 dbj|BAB33540.1| (AP002550) transcriptional regulator for pyruvate dehydrogenase complex [Escherichia coli O157:H7] 258 46.89 67.82 5 568.0
GC ORFID: 46207How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4769Glimmer Score:
Start: 4890666Stop: 4889893
Length: 774
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4769 translation of PA4769Homolog Bit Score 497.0
Other Homologs: t_PA4769 (ORF: GLIMMER)
GC ORF Sequence
ATGGAATTTGGTCAGGTCAGGCAGCGCCGTCTGTCGGATGACATCGTTGCGCAACTGGAGGCGATGATCCTG
GAGGGCACGCTGAAGTCCGGCGAGCGGCTGCCCGCCGAGCGCGTGCTTGCCGAGCAGTTCGGGGTTTCCCGG
CCGTCGCTGCGCGAGGCGATCCAGAAACTGGTGGCGAAGGGGCTGCTGGTCAGCCGCCAGGGTGGCGGCAAC
TATGTGACCGAATCGCTGGGCGCGACTTTCAGCGATCCGCTGCTGCACCTGCTGGAGGGTAACCCGGAGGCC
CAGCGCGACCTGCTGGAGTTTCGCCACACGCTGGAAGGGTCCTGTGCCTACTACGCGGCGCTGCGTGCGACC
TCCCTCGATCACCAGCGCCTGACCGAGGCCTTCGAGGCGCTCCAGGCCTGCTATGCGCGCAACGACCAGGTC
AGCGCGGAAGAGGGCGCCGCCGACGCGCGCTTCCACCTGGCGATCGCCGAGGCCAGCCACAACACCGTGCTG
CTGCACACCATCAAGGGCCTGTTCGACTTGCTGCGGCGCAACGTGGTGACCAATATCGGCGGGATGTACGCG
CAGCGCACGGAAACCCGCGCGCAACTGATGGAGCAGCACCAGCGCCTATACGACGCGATCATCAGCGGTCAG
GCGGAGCTGGCCCGGGAGGTGTCCAACCAGCACATCCACTATGTGCAGGAGGTCCTGGCGGAGGTCCAGGAA
GAGGCGCGCAGGATGAAGCGCTCGCAGCGCCGGCGCAGCGTGCAGGAGGACTAG