ViewGene
Locus Name:
GeneID:
Location:

GeneID:3204
TrivialName: PA14_09230
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09230
PAO1 Ortholog Locus:PA4229
Sequence Length:756
Protein Length:251
Start: 782754
Stop: 781999
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07617.1|AE004840_3 (AE004840) pyochelin biosynthetic protein PchC [Pseudomonas aeruginosa PAO1]
Identities = 249/251 (99%), Positives = 250/251 (99%) to pchC (PA4229) of PAO1.
Sequence:
ATGAGCGCCGCCTGGGTCCGGCCGTTCCGCCTGACGCCGATGCCGCGCCTGCGCCTGGCCTGCTTCCCCCAT
GCAGGCGGCAGCGCCAGCTTCTTCCGTAGCTGGAGCGAACGCCTGCCGCCAGACATCGACCTGCTTGCCCTG
CAGTACCCGGGCCGCGAGGACCGCTTCAACGAGGCGCCGGCTACCTGCCTGGAAGACCTCGCCGACGGCGCC
GCCCTCGCCCTGCGCGATTTCGCCGACGCGCCCCTGGCGCTGTTCGGCCACAGTCTCGGCGCGGCGCTGGCC
TACGAAACCGCCCTGCGCCTGGAAAACGCCGGCGCGCCGCTGCGCCACCTGTTCGTCTCCGCCCATCCGGCA
CCGCACCGGCAACGCGGCGGCGCATTGCACCGCGGCGACGAGGCGGCGCTGCTGGAGGACGTCCGCCGCCAG
GGTGGCGCCAGCGAGCTACTCGAGGACGCCGACCTGCGCGCGCTGTTCCTGCCGATCCTGCGCGCCGACTAC
CAGGCGATCGAGACCTACCGACGGGCGCAGCCCATCGCCCTGGCCTGCGCCCTCGACGTCCTCCTCGGCGAG
CACGACGAGGAAGTCAGCGCCGCCGAGGCGCAGGCCTGGAGCGACGCCAGCCGGACTCCCGCCAGGCTGCGG
CGCTTTCCTGGCGGCCACTTCTACCTGAGCGAGGGGCGCGACGCGGTGATCGAGCACCTGCTGCGCCGCCTC
GCACATCCCGACGCCCTTTCCCGAGAGGTTGCATGA
Translation:
MSAAWVRPFRLTPMPRLRLACFPHAGGSASFFRSWSERLPPDIDLLALQYPGREDRFNEAPATCLEDLADGA
ALALRDFADAPLALFGHSLGAALAYETALRLENAGAPLRHLFVSAHPAPHRQRGGALHRGDEAALLEDVRRQ
GGASELLEDADLRALFLPILRADYQAIETYRRAQPIALACALDVLLGEHDEEVSAAEAQAWSDASRTPARLR
RFPGGHFYLSEGRDAVIEHLLRRLAHPDALSREVA*
AnnotationID:3212GeneID:3204
AnnotatorUID: danlee
Modification Date/Time: 2003-10-20 17:05:00
Gene Name:pchC
Confidence Code:1
GeneProduct:pyochelin biosynthetic protein PchC
Cell Localization:()
Synonyms:alt GeneProduct name: thioesterase
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
99% identical to pchC (PA4229) of PAO1.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6411




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23553




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3204
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5171
                           PA4229_tr
                           translation of PA4229
                           251
                           99.20
                           99.60
                           0
                           1280.0
     

     
     
145374
                           gb|AAG07617.1|AE004840_3
                           (AE004840) pyochelin biosynthetic protein PchC [Pseudomonas aeruginosa PAO1]
                           251
                           99.20
                           99.60
                           0
                           1280.0
     

     
     
145375
                           emb|CAA57967.1|
                           (X82644) pchC [Pseudomonas aeruginosa]
                           251
                           98.00
                           98.00
                           1
                           1251.0
     

     
     
145378
                           dbj|BAC76544.1|
                           (AB088224) probable thioesterase [Streptomyces rochei]
                           266
                           43.98
                           56.01
                           16
                           507.0
     

     
     
145380
                           dbj|BAB69188.1|
                           (AB070940) thioesterase [Streptomyces avermitilis]
                           259
                           43.24
                           54.82
                           15
                           495.0
     

     






      

          
GC ORFID: 46206How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4229Glimmer Score: 

          
Start: 4171183Stop: 4171938

          
Length: 756


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4229 translation of PA4229Homolog Bit Score 497.0

          
Other Homologs:  t_PA4229 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCGCCTGGGTCCGGCCGTTCCGCCTGACGCCGATGCCGCGCCTGCGCCTGGCCTGCTTCCCCCAT 
GCAGGCGGCAGCGCCAGCTTCTTCCGTAGCTGGAGCGAACGCCTGCCGCCAGACATCGACCTGCTTGCCCTG 
CAGTACCCGGGCCGCGAGGACCGCTTCAACGAGGCGCCGGCTACCTGCCTGGAAGACCTCGCCGACGGCGCC 
GCCCTCGCCCTGCGCGATTTCGCCGACGCGCCCCTGGCGCTGTTCGGCCACAGTCTCGGCGCGGCGCTGGCC 
TACGAAACCGCCCTGCGCCTGGAAAACGCCGGCGCGCCGCTGCGCCACCTGTTCGTCTCCGCCCATCCGGCA 
CCGCACCGGCAACGCGGCGGCGCATTGCACCGCGGCGACGAGGCGGCGCTGCTGGAGGACGTCCGCCGCCAG 
GGTGGCGCCAGCGAGCTACTCGAGGACGCCGACCTGCGCGCGCTGTTCCTGCCGATCCTGCGCGCCGACTAC 
CAGGCGATCGAGACCTACCGACGGGCGCAGCCCATCGCCCTGGCCTGCGCCCTCGACGTCCTCCTCGGCGAG 
CACGACGAGGAAGTCAGCGCCGCCGAGGCGCAGGCCTGGAGCGACGCCAGCCGGACTCCCGCCAGGCTGCGG 
CGCTTTCCTGGCGGCCACTTCTACCTGAGCGAGGGGCGCGACGCGGTGATCGAGCACCTGCTGCGCCGCCTC 
GCACATCCCGACGCCCTTTCCCGAGAGGTTGCATGA