ViewGene
Locus Name:
GeneID:
Location:

GeneID:3203
TrivialName: PA14_16590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16590
PAO1 Ortholog Locus:PA3696
Sequence Length:747
Protein Length:248
Start: 1420051
Stop: 1420797
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07084.1|AE004789_4 (AE004789) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 247/248 (99%), Positives = 247/248 (99%)
Sequence:
ATGGCCAGCCACGAACTCGACTACCGCATCCTCGGCGAATCCATGCAGACCGTGGAGATCGAACTCGATCCC
GGGGAAACCGTGATCGCCGAGGCCGGGGCGATGAACTACATGACCGGCGACATCCGCTTCACCGCGCGGATG
GGCGACGGCTCCGACGGCAGCCTGCTGGGCAAGCTGTGGAGCGCCGGCAAACGCAAGCTCGGTGGCGAGTCG
GTGTTCATGACCCACTTCACCAACGAAGGCCAGGGCAAGCAGCACGTGGCCTTTGCCGCGCCCTATCCGGGC
AGCGTGGTGGCGGTGGACCTGGACGATGTCGGCGGGCGCCTGTTCTGCCAGAAGGACTCGTTCCTCTGCGCG
GCCTATGGCACCCGGGTCGGCATCGCCTTCGCCAAGCGCCTGGGCGCCGGTTTCTTCGGCGGCGAGGGCTTC
ATCCTGCAGAAGCTCGAGGGCGATGGCCTGGTCTTCGTCCACGCCGGCGGTACGCTGATCCGCCGCCAGTTG
AATGGCGAGACGCTGCGGGTCGACACCGGTTGCCTGGTGGCCTTCACCGATGGCATCGACTACGACGTGCAA
CTGGCCGGCGGCCTGAAGAGCATGCTGTTCGGCGGCGAAGGATTGCTGCTGACCACCCTCAAGGGCAGCGGC
ACCGTCTGGCTGCAGAGCCTGCCGTTCTCGCGCCTGGCCGGGCGCATCTACGACGCCACCTTTCGCGCCCGC
GAAGAGGTAAGGACCAACAACGGATGA
Translation:
MASHELDYRILGESMQTVEIELDPGETVIAEAGAMNYMTGDIRFTARMGDGSDGSLLGKLWSAGKRKLGGES
VFMTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFAKRLGAGFFGGEGF
ILQKLEGDGLVFVHAGGTLIRRQLNGETLRVDTGCLVAFTDGIDYDVQLAGGLKSMLFGGEGLLLTTLKGSG
TVWLQSLPFSRLAGRIYDATFRAREEVRTNNG*
AnnotationID:3211GeneID:3203
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 11:11:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3696
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6409




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23551




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31853




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3203_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3203
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5170
                           PA3696_tr
                           translation of PA3696
                           248
                           99.59
                           99.59
                           0
                           1280.0
     

     
     
145358
                           gb|AAG07084.1|AE004789_4
                           (AE004789) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           248
                           99.59
                           99.59
                           0
                           1280.0
     

     
     
145359
                           gb|AAN55017.1|AE015639_12
                           (AE015639) conserved hypothetical protein TIGR00266 [Shewanella oneidensis MR-1]
                           264
                           63.25
                           71.59
                           16
                           850.0
     

     
     
145360
                           gb|AAK79504.1|AE007664_1
                           (AE007664) Uncharacterized conserved protein [Clostridium acetobutylicum]
                           261
                           55.93
                           70.11
                           14
                           768.0
     

     
     
145362
                           gb|AAP11760.1|
                           (AE017013) hypothetical protein [Bacillus cereus ATCC 14579]
                           260
                           55.76
                           69.23
                           12
                           745.0
     

     






      

          
GC ORFID: 46205How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3696Glimmer Score: 

          
Start: 3533886Stop: 3533140

          
Length: 747


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3696 translation of PA3696Homolog Bit Score 497.0

          
Other Homologs:  psyr_15may02_Scaffold15_revised_gene2530 (ORF: BLASTX 273.0), t_PA3696 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAGCCACGAACTCGACTACCGCATCCTCGGCGAATCCATGCAGACCGTGGAGATCGAACTCGATCCC 
GGGGAAACCGTGATCGCCGAGGCCGGGGCGATGAACTACATGACCGGCGACATCCGCTTCACCGCGCGGATG 
GGCGACGGCTCCGACGGCAGCCTGCTGGGCAAGCTGTGGAGCGCCGGCAAACGCAAGCTCGGTGGCGAGTCG 
GTGTTCATGACCCACTTCACCAACGAAGGCCAGGGCAAGCAGCACGTGGCCTTTGCCGCGCCCTATCCGGGC 
AGCGTGGTGGCGGTGGACCTGGACGATGTCGGCGGGCGCCTGTTCTGCCAGAAGGACTCGTTCCTCTGCGCG 
GCCTATGGCACCCGGGTCGGCATCGCCTTCGCCAAGCGCCTGGGCGCCGGTTTCTTCGGCGGCGAGGGCTTC 
ATCCTGCAGAAGCTCGAGGGCGATGGCCTGGTCTTCGTCCACGCCGGCGGTACGCTGATCCGCCGCCAGTTG 
AATGGCGAGACGCTGCGGGTCGACACCGGTTGCCTGGTGGCCTTCACCGATGGCATCGACTACGACGTGCAA 
CTGGCCGGCGGCCTGAAGAGCATGCTGTTCGGCGGCGAAGGATTGCTGCTGACCACCCTCAAGGGCAGCGGC 
ACCGTCTGGCTGCAGAGCCTGCCGTTCTCGCGCCTGGCCGGGCGCATCTACGACGCCACCTTTCGCGCCCGC 
GAAGAGGTAAGGACCAACAACGGATGA