ViewGene

Locus Name:
GeneID:
Location:

GeneID:3202
TrivialName: PA14_19520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19520
PAO1 Ortholog Locus:PA3447
Sequence Length:750
Protein Length:249
Start: 1687634
Stop: 1688383
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06835.1|AE004765_8 (AE004765) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 249/249 (100%), Positives = 249/249 (100%)
Sequence:
ATGAGCGGCCTGCTCGACCTGCTGGAGATTCGCAAGGCCTATGGCGATACGCGGGTGCTGGAGGGCGTGGCG
CTGTCGCTGGCGCCCGGCGAGGTGGTCAGCCTGCTCGGCCCCAGTGGTTGCGGCAAGAGCACCCTGCTGCGG
ATCGCCGCCGGACTGGACGATGACTTCCAGGGCACTGTCGAACGCAACCCGATCCTCGGCTTCGGCCCGGAC
GGCGAGAACGGCCGCAGCGGCGGAATCGGCGTGGTGTTCCAGGAGCCGCGCCTGTTGCCCTGGCTGACGGTG
GCGCAGAACGTCGGTTTCGCCGACGGCTGGCTGGAGGACGAGCACTGGGTCGAGCGCCTGCTCGCCGATGTC
GGACTGGCCGGCTGCGGAGGATTGCTGCCCAAGCAACTGTCCGGCGGCATGGCGCAGCGCGCGGCGATCGCT
CGCGGTCTCTACGGACGGCCGCAGGTGCTGTTGCTCGACGAGCCGTTCAGCGCGGTCGACGCCTTCACCCGC
ATGCGCCTCCAGGACCTGCTGCAGGACGTGGTGCAGAACTACGAGATCAGCGTCCTGCTGGTCACCCACGAT
CTCGACGAGGCGTTCTATCTCGCCGACCGCGTGCTGCTGATGGGCGGCCGTCCCGGACACATCCGCCGCGAG
TTCCACGTACCGCTGGCGCGTCCCCGCGATCGCCGGGCGGTGGAGCTGGCCTACTTGCGCGGCGAGGCCCTG
ACCGAAATGCAGCGGGCACACGTGCTCTGA
Translation:
MSGLLDLLEIRKAYGDTRVLEGVALSLAPGEVVSLLGPSGCGKSTLLRIAAGLDDDFQGTVERNPILGFGPD
GENGRSGGIGVVFQEPRLLPWLTVAQNVGFADGWLEDEHWVERLLADVGLAGCGGLLPKQLSGGMAQRAAIA
RGLYGRPQVLLLDEPFSAVDAFTRMRLQDLLQDVVQNYEISVLLVTHDLDEAFYLADRVLLMGGRPGHIRRE
FHVPLARPRDRRAVELAYLRGEALTEMQRAHVL*
AnnotationID:3210GeneID:3202
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 18:06:03
Gene Name:
Confidence Code:3
GeneProduct:putative sulfonate transport system, ATP-binding protein
Cell Localization:()
Synonyms:ssuB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00267,pfam00005,COG1116,COG4525
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO56286.1| (AE016865) ABC transporter, ATP-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 232

 Score =  271 bits (692), Expect = 3e-72
 Identities = 143/245 (58%), Positives = 173/245 (70%), Gaps = 13/245 (5%)

>emb|CAB12711.2| (Z99108) aliphatic sulfonate ABC transporter (binding protein)
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 270

 Score =  194 bits (492), Expect = 5e-49
 Identities = 108/236 (45%), Positives = 152/236 (64%), Gaps = 14/236 (5%)

>gb|AAN69237.1|AE016558_7 (AE016787) sulfonate ABC transporter, ATP-binding protein, putative
           [Pseudomonas putida KT2440]
          Length = 273

 Score =  189 bits (479), Expect = 2e-47
 Identities = 114/257 (44%), Positives = 154/257 (59%), Gaps = 22/257 (8%)

Structural Features:
cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter 
nucleotide-binding domain
CD-Length = 217 residues,  98.6% aligned
Score =  159 bits (405), Expect = 2e-40
Identities = 87/219 (39%), Positives = 123/219 (56%), Gaps = 12/219 (5%)

pfam00005, ABC_tran, ABC transporter.
CD-Length = 183 residues,  98.4% aligned
Score =  142 bits (359), Expect = 4e-35
Identities = 77/183 (42%), Positives = 108/183 (59%), Gaps = 9/183 (4%)

COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, 
ATPase component [Inorganic ion transport and metabolism]
CD-Length = 248 residues,  98.4% aligned
Score =  271 bits (694), Expect = 6e-74
Identities = 124/252 (49%), Positives = 151/252 (59%), Gaps = 15/252 (5%)

COG4525, TauB, ABC-type taurine transport system, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 259 residues,  78.8% aligned
Score =  178 bits (454), Expect = 5e-46
Identities = 92/210 (43%), Positives = 122/210 (58%), Gaps = 11/210 (5%)
Genomic Context:
Comment:
ReferenceID:6407
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23549
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32122
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3202_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3202

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5161 PA3447_tr translation of PA3447 249 99.99 99.99 0 1279.0
145090 gb|AAG06835.1|AE004765_8 (AE004765) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1] 249 99.99 99.99 0 1279.0
145091 gb|AAO56286.1| (AE016865) ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000] 249 57.42 69.47 17 700.0
145092 gb|AAM35735.1| (AE011716) ABC transporter ATP-binding protein [Xanthomonas axonopodis pv. citri str. 306] 258 52.32 63.56 15 596.0
145102 emb|CAE28063.1| (BX572601) putative sulfonate transport system, ATP-binding protein. Subunit of ABC transporter [Rhodopseudomonas palustris CGA009] 275 42.90 55.27 42 469.0
GC ORFID: 46204How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3447Glimmer Score:
Start: 3266298Stop: 3265549
Length: 750
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3447 translation of PA3447Homolog Bit Score 497.0
Other Homologs: psyr_15may02_Scaffold7_revised_gene7016 (ORF: BLASTX 277.0), psyr_15may02_Scaffold6_revised_gene6502 (ORF: BLASTX 155.0), t_PA3937 (ORF: BLASTX 137.0), t_PA2308 (ORF: BLASTX 137.0), t_PA3447 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGGCCTGCTCGACCTGCTGGAGATTCGCAAGGCCTATGGCGATACGCGGGTGCTGGAGGGCGTGGCG
CTGTCGCTGGCGCCCGGCGAGGTGGTCAGCCTGCTCGGCCCCAGTGGTTGCGGCAAGAGCACCCTGCTGCGG
ATCGCCGCCGGACTGGACGATGACTTCCAGGGCACTGTCGAACGCAACCCGATCCTCGGCTTCGGCCCGGAC
GGCGAGAACGGCCGCAGCGGCGGAATCGGCGTGGTGTTCCAGGAGCCGCGCCTGTTGCCCTGGCTGACGGTG
GCGCAGAACGTCGGTTTCGCCGACGGCTGGCTGGAGGACGAGCACTGGGTCGAGCGCCTGCTCGCCGATGTC
GGACTGGCCGGCTGCGGAGGATTGCTGCCCAAGCAACTGTCCGGCGGCATGGCGCAGCGCGCGGCGATCGCT
CGCGGTCTCTACGGACGGCCGCAGGTGCTGTTGCTCGACGAGCCGTTCAGCGCGGTCGACGCCTTCACCCGC
ATGCGCCTCCAGGACCTGCTGCAGGACGTGGTGCAGAACTACGAGATCAGCGTCCTGCTGGTCACCCACGAT
CTCGACGAGGCGTTCTATCTCGCCGACCGCGTGCTGCTGATGGGCGGCCGTCCCGGACACATCCGCCGCGAG
TTCCACGTACCGCTGGCGCGTCCCCGCGATCGCCGGGCGGTGGAGCTGGCCTACTTGCGCGGCGAGGCCCTG
ACCGAAATGCAGCGGGCACACGTGCTCTGA