ViewGene
Locus Name:
GeneID:
Location:

GeneID:3199
TrivialName: PA14_59700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59700
PAO1 Ortholog Locus:
Sequence Length:747
Protein Length:248
Start: 5312343
Stop: 5313089
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84172.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 248/248 (100%), Positives = 248/248 (100%)
Sequence:
ATGGCTGAAGTCACTCAACGAGCAGAGCAGCAACAAGAGAGCCAGAAGACCCTTCTCGGCACCATCATCAGT
ACGCCCTTCCAATTTCTCGGCGTGATGTTCGGGTCGCTGATCGGCGCAATCATCGTGGAGTGGGTTTGCCTG
TATTTCTTCTGGCCTGACGCGGGCTGGAAGCATGCCCAGGCCATGTTTGAGTACGAACTCAGTTGGCTGTCG
CAGGGGCTGCTACACAGCGTCGTCGTGCAGGAGCCAGGTCGAACCGCCACCTGGCTGGCCCAGTTGGCCTAT
GACTGGTTGTTCGTGAAGACCGGGATGGTCGACTGGATGACCAACATGACTACCATCGCGCAGGCCGGGCCA
CGGAGCCCGCTGGACGTTCGCTATCTCACCGCCCAGGGTGTCTCCACGCTGCAGAACTACGGCCTGGCCGCG
CTGTACACGGTGCTGACATTCGTCGTGCGCCTGGTGATCCTGGTCATGACGATCCCGTTATTCGTGATGGCC
GCGTTCACCGGCCTGGTGGACGGCCTGGTGCGCCGGGACCTGCGCAAGTTCGGCGCCGGCCGGGAGTCCAGC
TACCTCTACCACAAGGCGCGCGGCAGCATCATTCCGCTAGCGGTCGTCCCTTGGACGCTCTACCTGGCAATT
CCCATCAACATCAATCCCCTGCTCATCCTGTTGCCCTGCGCCGCACTGCTCGGCGTAGCGGTGTGCATCACA
GCATCCACCTTCAAAAAGTACCTATAG
Translation:
MAEVTQRAEQQQESQKTLLGTIISTPFQFLGVMFGSLIGAIIVEWVCLYFFWPDAGWKHAQAMFEYELSWLS
QGLLHSVVVQEPGRTATWLAQLAYDWLFVKTGMVDWMTNMTTIAQAGPRSPLDVRYLTAQGVSTLQNYGLAA
LYTVLTFVVRLVILVMTIPLFVMAAFTGLVDGLVRRDLRKFGAGRESSYLYHKARGSIIPLAVVPWTLYLAI
PININPLLILLPCAALLGVAVCITASTFKKYL*
AnnotationID:3207GeneID:3199
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 23:11:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6401




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23543




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3199
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
145027
                           gb|AAP84172.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           248
                           99.99
                           99.99
                           0
                           1281.0
     

     
     
145028
                           gb|AAP84162.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           248
                           85.88
                           86.29
                           32
                           1108.0
     

     
     
145029
                           gb|AAO54414.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           249
                           65.46
                           81.52
                           1
                           895.0
     

     
     
145030
                           emb|CAC86812.1|
                           (AJ344068) hypothetical protein [Pseudomonas putida]
                           249
                           55.02
                           74.29
                           1
                           744.0
     

     
     
145031
                           gb|AAN62289.1|AF440524_76
                           (AF440524) hypothetical protein [Pseudomonas aeruginosa]
                           253
                           52.96
                           73.51
                           9
                           709.0
     

     






      

          
GC ORFID: 46201How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL046Glimmer Score: 

          
Start: 4576022Stop: 4576768

          
Length: 747


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RL046 248 Homolog: ORF105 / Hypothetical protein / P. putida / plasmid pWWO (CAC86812) translation of RL046Homolog Bit Score 498.0

          
Other Homologs:  t_RL035 (ORF: BLASTX 431.0), psyr_15may02_Scaffold10_revised_gene1633 (ORF: BLASTX 350.0), t_RL046 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGAAGTCACTCAACGAGCAGAGCAGCAACAAGAGAGCCAGAAGACCCTTCTCGGCACCATCATCAGT 
ACGCCCTTCCAATTTCTCGGCGTGATGTTCGGGTCGCTGATCGGCGCAATCATCGTGGAGTGGGTTTGCCTG 
TATTTCTTCTGGCCTGACGCGGGCTGGAAGCATGCCCAGGCCATGTTTGAGTACGAACTCAGTTGGCTGTCG 
CAGGGGCTGCTACACAGCGTCGTCGTGCAGGAGCCAGGTCGAACCGCCACCTGGCTGGCCCAGTTGGCCTAT 
GACTGGTTGTTCGTGAAGACCGGGATGGTCGACTGGATGACCAACATGACTACCATCGCGCAGGCCGGGCCA 
CGGAGCCCGCTGGACGTTCGCTATCTCACCGCCCAGGGTGTCTCCACGCTGCAGAACTACGGCCTGGCCGCG 
CTGTACACGGTGCTGACATTCGTCGTGCGCCTGGTGATCCTGGTCATGACGATCCCGTTATTCGTGATGGCC 
GCGTTCACCGGCCTGGTGGACGGCCTGGTGCGCCGGGACCTGCGCAAGTTCGGCGCCGGCCGGGAGTCCAGC 
TACCTCTACCACAAGGCGCGCGGCAGCATCATTCCGCTAGCGGTCGTCCCTTGGACGCTCTACCTGGCAATT 
CCCATCAACATCAATCCCCTGCTCATCCTGTTGCCCTGCGCCGCACTGCTCGGCGTAGCGGTGTGCATCACA 
GCATCCACCTTCAAAAAGTACCTATAG