ViewGene
Locus Name:
GeneID:
Location:

GeneID:3198
TrivialName: PA14_59090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59090
PAO1 Ortholog Locus:
Sequence Length:768
Protein Length:255
Start: 5262161
Stop: 5262928
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84226.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 255/255 (100%), Positives = 255/255 (100%)
Sequence:
ATGTCGAAGTCGACGATCAATGAAGCGGTCCTGACGCAGGTGCTCAACCACCTGCGCAACGGCCAGCTCAGG
CGTTGTGCCGAGATGGGGCTGCGGCCGGAGATTCTGGCTCAGCTCCAACAGCCTGCCGTCATGAGCATCCTG
ACCAATACCCCGGTTTCCTGGGTAGATGTCAGAGTGAACATCGACGTCATGGAGAAAATCCTGGCCACAGCC
GAGCGCAGCGCGCAGGAAGACCTGCAGATCGAACGCGCACTGAAGCTGGGAGCCACCACAACGATGATCCAG
AGCTTTTTCGGTCTGTCGCCGGAGGACACCGCCACCAAGCGCTTGATGCTGGAGATCCACCCGCGCCGCGGT
CGCTGGCGGCAGCTCGATGAACAGATCGAGCGCCAGATATGGTTCCGCTGGGAGCACCTGATGCAGGAAAAT
CAGGTCCGCCTTGAAGACAGCATGGAGTTGCTGGACATCGCGATGATCCTCACAGAGGAAATCAACGCCGGA
ATCGAACAAGACAGTCCAGAATTCATCAGCCTCGCCATTGTTTGGTCTCTCATCCAGAGCTGGTTGAAAGAC
GGGCTCTATCCGTCTGGCAAATCGAGCCAGAGCCAGGCGGGCCTGCAAAAGTCCCAATCCACTCTTTACCTC
GCTAGCGTCAGCTCACACCTGCCCCACTCTGCCCCATCCGCAACAACGCAGGTGAACGCTGAGACAGAACGT
CAACAACTACTGAACCTGGTTCAGTCGGAAGGCGACACAGCACCATGA
Translation:
MSKSTINEAVLTQVLNHLRNGQLRRCAEMGLRPEILAQLQQPAVMSILTNTPVSWVDVRVNIDVMEKILATA
ERSAQEDLQIERALKLGATTTMIQSFFGLSPEDTATKRLMLEIHPRRGRWRQLDEQIERQIWFRWEHLMQEN
QVRLEDSMELLDIAMILTEEINAGIEQDSPEFISLAIVWSLIQSWLKDGLYPSGKSSQSQAGLQKSQSTLYL
ASVSSHLPHSAPSATTQVNAETERQQLLNLVQSEGDTAP*
AnnotationID:3206GeneID:3198
AnnotatorUID: diggins
Modification Date/Time: 2006-02-02 06:06:27
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6399




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23541




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3198
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
145024
                           gb|AAP84226.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           255
                           99.99
                           99.99
                           0
                           1282.0
     

     
     
145025
                           emb|CAE92952.1|
                           (AJ617740) hypothetical protein [Pseudomonas putida]
                           256
                           29.68
                           45.70
                           71
                           365.0
     

     
     
145026
                           emb|CAD60668.1|
                           (AJ536665) hypothetical protein [Pseudomonas sp. B13]
                           256
                           29.68
                           45.70
                           71
                           365.0
     

     






      

          
GC ORFID: 46200How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL101Glimmer Score: 

          
Start: 4525840Stop: 4526607

          
Length: 768


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL101 255 Homolog: XAC2207 / Hypothetical protein / X.axonopodis pv. citri / 306 (AAM37060) translation of RL101Homolog Bit Score 498.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1573 (ORF: BLASTX 186.0), t_RL101 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGAAGTCGACGATCAATGAAGCGGTCCTGACGCAGGTGCTCAACCACCTGCGCAACGGCCAGCTCAGG 
CGTTGTGCCGAGATGGGGCTGCGGCCGGAGATTCTGGCTCAGCTCCAACAGCCTGCCGTCATGAGCATCCTG 
ACCAATACCCCGGTTTCCTGGGTAGATGTCAGAGTGAACATCGACGTCATGGAGAAAATCCTGGCCACAGCC 
GAGCGCAGCGCGCAGGAAGACCTGCAGATCGAACGCGCACTGAAGCTGGGAGCCACCACAACGATGATCCAG 
AGCTTTTTCGGTCTGTCGCCGGAGGACACCGCCACCAAGCGCTTGATGCTGGAGATCCACCCGCGCCGCGGT 
CGCTGGCGGCAGCTCGATGAACAGATCGAGCGCCAGATATGGTTCCGCTGGGAGCACCTGATGCAGGAAAAT 
CAGGTCCGCCTTGAAGACAGCATGGAGTTGCTGGACATCGCGATGATCCTCACAGAGGAAATCAACGCCGGA 
ATCGAACAAGACAGTCCAGAATTCATCAGCCTCGCCATTGTTTGGTCTCTCATCCAGAGCTGGTTGAAAGAC 
GGGCTCTATCCGTCTGGCAAATCGAGCCAGAGCCAGGCGGGCCTGCAAAAGTCCCAATCCACTCTTTACCTC 
GCTAGCGTCAGCTCACACCTGCCCCACTCTGCCCCATCCGCAACAACGCAGGTGAACGCTGAGACAGAACGT 
CAACAACTACTGAACCTGGTTCAGTCGGAAGGCGACACAGCACCATGA