ViewGene
Locus Name:
GeneID:
Location:

GeneID:3195
TrivialName: PA14_67840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67840
PAO1 Ortholog Locus:PA5137
Sequence Length:756
Protein Length:251
Start: 6058870
Stop: 6058115
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08522.1|AE004926_12 (AE004926) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 251/251 (100%), Positives = 251/251 (100%)
Sequence:
ATGCTGAAAGTCCTGATCCAGACCCTGATCCTGGGGGTATTGCTGGGGGCCTCCGCGGCCCGTGCCGAATTG
CCCGCCGACTACAAGGTGGTGCTGCTGACCGAGAACTTCCCGCCCTTCAACATGGCGGTGGACGACAAGAAC
TTCGCCCGCGACGATGGCATCGACGGCATCAGTGCCGACATCGTCCGGGAGATGTTCAGGCGCGCCGGCATC
GGCTATTCCCTGAGCCTGCGCTTCCCCTGGGACCGCCTGTACCGGTTGACCCTGGACAAGCCCGGCTACGGG
TTGTTCTCCATGACCTACACCCCCGAGCGGGTGCCGCAGTTCAAGTGGGTCGGCCCGCTGGCCGACACCAGT
TGGGTGTTGCTGGCGCCGGCCGGCAGCAAGATCGCCGTGAAGAATCTCAAGGACGCCGCCCGCTACAAGCTC
GGCGCCTACAAGAACGACGCGGTCAGCCAGCACCTGGAAGCCCAGGGCATCCCGGTGATCAACGCCCTGCGC
GACCAGGAAAACGTGAAGAAGCTTACCGGCGGGCAGATCGACCTGTGGGCCACCACCGATCCGGTCGGGCGC
TACCTGGCCAAGCAGGAAGGCGTGTCCGGCCTGCAGACGGTGCTGCGTTTCAACGAGGCCAAGCTCTACCTG
GCGTTGAACAAGGACACTCCGGACGAGGTGGTGGAGCGCCTGCAAAAGGCCCTGGAGCAGATGCGCCAGGAA
GGCTTCGTCGACGAAGCCGTCGCCAACTACCTCTGA
Translation:
MLKVLIQTLILGVLLGASAARAELPADYKVVLLTENFPPFNMAVDDKNFARDDGIDGISADIVREMFRRAGI
GYSLSLRFPWDRLYRLTLDKPGYGLFSMTYTPERVPQFKWVGPLADTSWVLLAPAGSKIAVKNLKDAARYKL
GAYKNDAVSQHLEAQGIPVINALRDQENVKKLTGGQIDLWATTDPVGRYLAKQEGVSGLQTVLRFNEAKLYL
ALNKDTPDEVVERLQKALEQMRQEGFVDEAVANYL*
AnnotationID:3203GeneID:3195
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 12:12:40
Gene Name:
Confidence Code:3
GeneProduct:putative ABC-type amino acid transporter
Cell Localization:()
Synonyms:PA5137
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0834,smart00062
Secondary Functional Category(ies):Two-component regulatory systems
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, 
periplasmic component/domain 
[Amino acid transport and metabolism / Signal transduction mechanisms]
CD-Length = 275 residues,  94.5% aligned
Score = 92.8 bits (229), Expect = 3e-20

smart00062, PBPb, Bacterial periplasmic substrate-binding proteins
CD-Length = 222 residues,  97.3% aligned
Score = 67.3 bits (164), Expect = 2e-12
Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 15/226 (6%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6393




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23535




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34925




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3195_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3195
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5155
                           PA5137_tr
                           translation of PA5137
                           251
                           99.99
                           99.99
                           0
                           1283.0
     

     
     
145016
                           gb|AAG08522.1|AE004926_12
                           (AE004926) hypothetical protein PA5137 [Pseudomonas aeruginosa PAO1]
                           251
                           99.99
                           99.99
                           0
                           1283.0
     

     
     
5156
                           PA5138_tr
                           translation of PA5138
                           255
                           58.03
                           74.50
                           9
                           780.0
     

     
     
145018
                           gb|AAG08523.1|AE004927_1
                           (AE004927) hypothetical protein PA5138 [Pseudomonas aeruginosa PAO1]
                           255
                           58.03
                           74.50
                           9
                           780.0
     

     
     
145017
                           gb|AAO58759.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           270
                           56.29
                           69.25
                           20
                           790.0
     

     






      

          
GC ORFID: 46197How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5137Glimmer Score: 

          
Start: 5322555Stop: 5321800

          
Length: 756


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5137 translation of PA5137Homolog Bit Score 498.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6490 (ORF: BLASTX 308.0), t_PA5138 (ORF: BLASTX 304.0), t_PA5139 (ORF: BLASTX 262.0), t_PA5137 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAAAGTCCTGATCCAGACCCTGATCCTGGGGGTATTGCTGGGGGCCTCCGCGGCCCGTGCCGAATTG 
CCCGCCGACTACAAGGTGGTGCTGCTGACCGAGAACTTCCCGCCCTTCAACATGGCGGTGGACGACAAGAAC 
TTCGCCCGCGACGATGGCATCGACGGCATCAGTGCCGACATCGTCCGGGAGATGTTCAGGCGCGCCGGCATC 
GGCTATTCCCTGAGCCTGCGCTTCCCCTGGGACCGCCTGTACCGGTTGACCCTGGACAAGCCCGGCTACGGG 
TTGTTCTCCATGACCTACACCCCCGAGCGGGTGCCGCAGTTCAAGTGGGTCGGCCCGCTGGCCGACACCAGT 
TGGGTGTTGCTGGCGCCGGCCGGCAGCAAGATCGCCGTGAAGAATCTCAAGGACGCCGCCCGCTACAAGCTC 
GGCGCCTACAAGAACGACGCGGTCAGCCAGCACCTGGAAGCCCAGGGCATCCCGGTGATCAACGCCCTGCGC 
GACCAGGAAAACGTGAAGAAGCTTACCGGCGGGCAGATCGACCTGTGGGCCACCACCGATCCGGTCGGGCGC 
TACCTGGCCAAGCAGGAAGGCGTGTCCGGCCTGCAGACGGTGCTGCGTTTCAACGAGGCCAAGCTCTACCTG 
GCGTTGAACAAGGACACTCCGGACGAGGTGGTGGAGCGCCTGCAAAAGGCCCTGGAGCAGATGCGCCAGGAA 
GGCTTCGTCGACGAAGCCGTCGCCAACTACCTCTGA