ViewGene
Locus Name:
GeneID:
Location:

GeneID:3194
TrivialName: PA14_56250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56250
PAO1 Ortholog Locus:PA4330
Sequence Length:774
Protein Length:257
Start: 5022814
Stop: 5022041
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07718.1|AE004849_5 (AE004849) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
Identities = 257/257 (100%), Positives = 257/257 (100%)
Sequence:
ATGAGCGAGCTGATTCGGGTCGAACGCGAAACGGGGCTGCTGACCCTGCGCCTGGACCGCCAGGACAAGAAG
AACGCGCTGACCCGCGCGATGTACAGCCGAATGGCCGAGGCGCTGCTGGAGGCGCAGGCCGATACGGCTGTG
CGGGTGGTGCTGATCACTGGCGGCGACGCCTGCTTCACCAGCGGCAACGACATCCTCGACTTCCTCGAGCAA
CCGCCATCCCTGCGCGACAGCCCGGTCGGCCGCTTCATGAGCGCCCTGCTGGAATTCCCCAAGCCGGTGATC
GCCGCGGTGAACGGACCGGCGGTGGGTATCGGCACCACCCTGCTGCTGCATTGCGATCTGGTCTTCGTTGGT
CGCAACGCGCGATTGAAGATGCCGTTCGTCAACCTCGGCCTGACACCGGAGTTCGGCTCGAGCCTGATCCTG
CCGCGCATGCTCGGTCATGCCAAGGCTGCGGAATTGCTGATGCTCGGCCAGGACTTCAGCGGCGAGCAGGCG
GCGGCCTGGGGCCTGGCCAATGCGGCGCTGGAGGATGGCGCCACGGTGCTGGAGCACGCCCGCGATGCGGCC
CGGCGCTTCCTGCACCTGGCGCCCTCGGCGGTAGTGGAGAGCAAGCGCCTGATGAAAGCGCCGTTTATCGAG
GAGCTTCGCCGGGTGATCGCCGAGGAAGGCGATATCTTCAGTACCCGACTGCGCTCGCCCGAGGCGATCGAG
GCGCTCAGCGCCTTCATGCACCGGCGCCAGCCGGATTTCTCCAGGTTCGCCTGA
Translation:
MSELIRVERETGLLTLRLDRQDKKNALTRAMYSRMAEALLEAQADTAVRVVLITGGDACFTSGNDILDFLEQ
PPSLRDSPVGRFMSALLEFPKPVIAAVNGPAVGIGTTLLLHCDLVFVGRNARLKMPFVNLGLTPEFGSSLIL
PRMLGHAKAAELLMLGQDFSGEQAAAWGLANAALEDGATVLEHARDAARRFLHLAPSAVVESKRLMKAPFIE
ELRRVIAEEGDIFSTRLRSPEAIEALSAFMHRRQPDFSRFA*
AnnotationID:3202GeneID:3194
AnnotatorUID: danlee
Modification Date/Time: 2006-03-29 14:02:51
Gene Name:
Confidence Code:3
GeneProduct:putative enoyl-CoA hydratase/isomerase
Cell Localization:()
Synonyms:PA4330
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1024,pfam00378,COG0447
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD14004.1| (AL646059) PUTATIVE ENOYL-COA HYDRATASE PROTEIN [Ralstonia
           solanacearum]
          Length = 254

 Score =  226 bits (576), Expect = 1e-58
 Identities = 119/253 (47%), Positives = 166/253 (65%), Gaps = 1/253 (0%)

>gb|AAN69328.1|AE016570_5 (AE016788) enoyl-CoA hydratase/isomerase family protein
           [Pseudomonas putida KT2440]
          Length = 248

 Score =  223 bits (568), Expect = 8e-58
 Identities = 121/238 (50%), Positives = 154/238 (64%)

>gb|AAK22384.1| (AE005712) enoyl-CoA hydratase/isomerase family protein
           [Caulobacter crescentus CB15]
          Length = 256

 Score =  202 bits (515), Expect = 1e-51
 Identities = 115/257 (44%), Positives = 160/257 (62%), Gaps = 5/257 (1%)








 
Structural Features:
COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. 

COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]








   
Genomic Context:






   
Comment:


















    ReferenceID:6391




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23533




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36689




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3194_cdd.html


    		




 
URL:

















    ReferenceID:38089




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3194a_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3194
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5154
                           PA4330_tr
                           translation of PA4330
                           257
                           99.99
                           99.99
                           0
                           1282.0
     

     
     
145002
                           gb|AAG07718.1|AE004849_5
                           (AE004849) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
                           257
                           99.99
                           99.99
                           0
                           1282.0
     

     
     
145004
                           gb|AAN69328.1|AE016570_5
                           (AE016788) enoyl-CoA hydratase/isomerase family protein [Pseudomonas putida KT2440]
                           257
                           47.47
                           60.70
                           9
                           565.0
     

     
     
145003
                           emb|CAD14004.1|
                           (AL646059) PUTATIVE ENOYL-COA HYDRATASE PROTEIN [Ralstonia solanacearum]
                           257
                           47.08
                           65.36
                           3
                           576.0
     

     
     
145005
                           gb|AAK22384.1|
                           (AE005712) enoyl-CoA hydratase/isomerase family protein [Caulobacter crescentus CB15]
                           259
                           44.40
                           61.77
                           5
                           520.0
     

     






      

          
GC ORFID: 46196How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4330Glimmer Score: 

          
Start: 4286490Stop: 4285717

          
Length: 774


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4330 translation of PA4330Homolog Bit Score 498.0

          
Other Homologs:  t_PA4330 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAGCTGATTCGGGTCGAACGCGAAACGGGGCTGCTGACCCTGCGCCTGGACCGCCAGGACAAGAAG 
AACGCGCTGACCCGCGCGATGTACAGCCGAATGGCCGAGGCGCTGCTGGAGGCGCAGGCCGATACGGCTGTG 
CGGGTGGTGCTGATCACTGGCGGCGACGCCTGCTTCACCAGCGGCAACGACATCCTCGACTTCCTCGAGCAA 
CCGCCATCCCTGCGCGACAGCCCGGTCGGCCGCTTCATGAGCGCCCTGCTGGAATTCCCCAAGCCGGTGATC 
GCCGCGGTGAACGGACCGGCGGTGGGTATCGGCACCACCCTGCTGCTGCATTGCGATCTGGTCTTCGTTGGT 
CGCAACGCGCGATTGAAGATGCCGTTCGTCAACCTCGGCCTGACACCGGAGTTCGGCTCGAGCCTGATCCTG 
CCGCGCATGCTCGGTCATGCCAAGGCTGCGGAATTGCTGATGCTCGGCCAGGACTTCAGCGGCGAGCAGGCG 
GCGGCCTGGGGCCTGGCCAATGCGGCGCTGGAGGATGGCGCCACGGTGCTGGAGCACGCCCGCGATGCGGCC 
CGGCGCTTCCTGCACCTGGCGCCCTCGGCGGTAGTGGAGAGCAAGCGCCTGATGAAAGCGCCGTTTATCGAG 
GAGCTTCGCCGGGTGATCGCCGAGGAAGGCGATATCTTCAGTACCCGACTGCGCTCGCCCGAGGCGATCGAG 
GCGCTCAGCGCCTTCATGCACCGGCGCCAGCCGGATTTCTCCAGGTTCGCCTGA