ViewGene
Locus Name:
GeneID:
Location:

GeneID:3193
TrivialName: PA14_19740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19740
PAO1 Ortholog Locus:PA3426
Sequence Length:771
Protein Length:256
Start: 1702924
Stop: 1703694
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06814.1|AE004763_9 (AE004763) probable enoyl CoA-hydratase/isomerase [Pseudomonas aeruginosa PAO1]
Identities = 256/256 (100%), Positives = 256/256 (100%)
Sequence:
ATGAGTGTCATCGTCGAACGCAACGGCCCGGTCACCACCCTGGTCATCGCTCGCCCGGAGCGGCGCAATGCG
GTGGACCGGCCGACCGCCCAGGCCCTGGCCGACGCCCTGCGCGAGTTCGAAGCGGACGATACGGCGCGGGTC
GCGGTACTCACCGGCAGCGGCGGCAATTTCTGCGCCGGCGCCGACCTGGCGGCGGTAGCCGAGGATGGCGAG
CGGCGCAATCGTCTGGAGGCGGAGGGCGACGGGCCGATGGGGCCGAGCCGCATGCAGCTCGGCAAGCCGCTG
ATCGCCGCCATCGAAGGCTATGCGGTGGCCGGCGGGCTGGAGCTGGCGCTGCTCGCCGACCTGCGGGTGATG
GCCGAGGACGCCATCTGCGGAGTGTTCTGCCGGCGTTTCGGGGTGCCGCTGATCGATGGCGGCAGCGTGCGC
CTGCCGCGGATCGTCGGGCAGGGCCGGGCGCTCGACCTGATCCTCACCGGGCGTCCGGTGAAGGCCGACGAA
GCGTTGCAGATCGGCCTGGCCAACCGGGTGGTGCCGAGCGGTTCGGCGCGAGCCGAGGCCGAGGAGCTGGCG
GCGGAACTCGCCGCCTTCCCGCAGACCTGCATGCTCGCCGACCGCGCCAGCGTATATGCGCAGTGGGAACTG
TCCTTCGACGTGGCCCTGGCCAACGAATTCCAGGGCGGACTGGCGGTGATCGAGAGCGGCGAGACCCTGGAG
GGCGCGCAGCGCTTCAAGGACGGCGAGGGGCGCCACGGGCGCTTCGAGTGA
Translation:
MSVIVERNGPVTTLVIARPERRNAVDRPTAQALADALREFEADDTARVAVLTGSGGNFCAGADLAAVAEDGE
RRNRLEAEGDGPMGPSRMQLGKPLIAAIEGYAVAGGLELALLADLRVMAEDAICGVFCRRFGVPLIDGGSVR
LPRIVGQGRALDLILTGRPVKADEALQIGLANRVVPSGSARAEAEELAAELAAFPQTCMLADRASVYAQWEL
SFDVALANEFQGGLAVIESGETLEGAQRFKDGEGRHGRFE*
AnnotationID:3201GeneID:3193
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 17:05:27
Gene Name:
Confidence Code:3
GeneProduct:putative enoyl CoA-hydratase/isomerase family protein
Cell Localization:()
Synonyms:PA3426
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00378,COG1024
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC74927.1| (AP005049) putative enoyl-CoA hydratase/isomerase family protein
           [Streptomyces avermitilis MA-4680]
          Length = 255

 Score =  309 bits (791), Expect = 1e-83
 Identities = 163/255 (63%), Positives = 192/255 (75%), Gaps = 4/255 (1%)

>emb|CAD17822.1| (AL646080) PUTATIVE ENOYL COA-HYDRATASE PROTEIN [Ralstonia
           solanacearum]
          Length = 259

 Score =  306 bits (785), Expect = 6e-83
 Identities = 165/254 (64%), Positives = 190/254 (74%), Gaps = 4/254 (1%)








 
Structural Features:
pfam00378, ECH, Enoyl-CoA hydratase/isomerase family.
CD-Length = 168 residues,  98.8% aligned
Score =  121 bits (306), Expect = 6e-29
Identities = 67/167 (40%), Positives = 98/167 (58%), Gaps = 1/167 (0%)


COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase 
[Lipid metabolism]
CD-Length = 257 residues,  96.5% aligned
Score =  169 bits (429), Expect = 3e-43
Identities = 98/249 (39%), Positives = 136/249 (54%), Gaps = 3/249 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6389




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23531




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32140




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3193_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3193
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5153
                           PA3426_tr
                           translation of PA3426
                           256
                           99.99
                           99.99
                           0
                           1283.0
     

     
     
144986
                           gb|AAG06814.1|AE004763_9
                           (AE004763) probable enoyl CoA-hydratase/isomerase [Pseudomonas aeruginosa PAO1]
                           256
                           99.99
                           99.99
                           0
                           1283.0
     

     
     
144989
                           emb|CAD17822.1|
                           (AL646080) PUTATIVE ENOYL COA-HYDRATASE PROTEIN [Ralstonia solanacearum]
                           261
                           63.21
                           72.79
                           7
                           783.0
     

     
     
144988
                           dbj|BAC74927.1|
                           (AP005049) putative enoyl-CoA hydratase/isomerase family protein [Streptomyces avermitilis MA-4680]
                           259
                           62.93
                           74.13
                           7
                           794.0
     

     
     
144987
                           emb|CAE25827.1|
                           (BX572594) probable enoyl CoA-hydratase/isomerase [Rhodopseudomonas palustris CGA009]
                           266
                           60.15
                           74.43
                           10
                           807.0
     

     






      

          
GC ORFID: 46195How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3426Glimmer Score: 

          
Start: 3251008Stop: 3250238

          
Length: 771


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3426 translation of PA3426Homolog Bit Score 498.0

          
Other Homologs:  t_PA3426 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGTCATCGTCGAACGCAACGGCCCGGTCACCACCCTGGTCATCGCTCGCCCGGAGCGGCGCAATGCG 
GTGGACCGGCCGACCGCCCAGGCCCTGGCCGACGCCCTGCGCGAGTTCGAAGCGGACGATACGGCGCGGGTC 
GCGGTACTCACCGGCAGCGGCGGCAATTTCTGCGCCGGCGCCGACCTGGCGGCGGTAGCCGAGGATGGCGAG 
CGGCGCAATCGTCTGGAGGCGGAGGGCGACGGGCCGATGGGGCCGAGCCGCATGCAGCTCGGCAAGCCGCTG 
ATCGCCGCCATCGAAGGCTATGCGGTGGCCGGCGGGCTGGAGCTGGCGCTGCTCGCCGACCTGCGGGTGATG 
GCCGAGGACGCCATCTGCGGAGTGTTCTGCCGGCGTTTCGGGGTGCCGCTGATCGATGGCGGCAGCGTGCGC 
CTGCCGCGGATCGTCGGGCAGGGCCGGGCGCTCGACCTGATCCTCACCGGGCGTCCGGTGAAGGCCGACGAA 
GCGTTGCAGATCGGCCTGGCCAACCGGGTGGTGCCGAGCGGTTCGGCGCGAGCCGAGGCCGAGGAGCTGGCG 
GCGGAACTCGCCGCCTTCCCGCAGACCTGCATGCTCGCCGACCGCGCCAGCGTATATGCGCAGTGGGAACTG 
TCCTTCGACGTGGCCCTGGCCAACGAATTCCAGGGCGGACTGGCGGTGATCGAGAGCGGCGAGACCCTGGAG 
GGCGCGCAGCGCTTCAAGGACGGCGAGGGGCGCCACGGGCGCTTCGAGTGA