ViewGene
Locus Name:
GeneID:
Location:

GeneID:3192
TrivialName: PA14_33550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33550
PAO1 Ortholog Locus:PA2408
Sequence Length:756
Protein Length:251
Start: 2952683
Stop: 2951928
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05796.1|AE004668_6 (AE004668) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 250/251 (99%), Positives = 250/251 (99%)
Sequence:
ATGACCGTGGCCGAACGGCTTTGCGCCACGCCTTGCGGGCCGGCCATCGAGTTCGCCGGGATCGACCTGAGC
CTCGGCGGCAGCCGCATCCTCGATGGCGTGCGCCTGCGCGTCGAGGCCGGTAGCGTGCACGCGCTGGTCGGA
CCGAACGGCGGCGGCAAGAGTTCGCTGGTCAAGACCCTGCTCGGGCAGATGCCGCATCGCGGCGAGCTGCGC
CTGGAGTGGCCCGGCGCGCCCGGCTGCATCGGCTACGTGCCGCAGGCGCTGGAGTTCGACCGCGGCCTGCCG
CTCACCGTCGACGATTTCATGGCCGCCATGTGCCAGCGCCGTCCGGCCTTCCTCGGCCTGTCGCGCAGCCGG
CGCCCGGCGATCGACGCGGCCCTGGAGCGGGTCGGCATGCTGGCCAAGCGCGGTCGGCGCATGGGCGCCCTC
TCCGGCGGCGAGCGCCAGCGCGTGCTGCTGGCCCAGGGCCTGGTACCGCCGCCGCAACTGCTGGTGCTGGAC
GAACCGATGTCGGCCCTCGACGAGGGCGGCATCCAGGTCTTCGAGCGGCTGCTGCTGGACTGGCGCCAGGCC
GGCGTCACCGTGCTCTGGATCGAGCACGACCTGGAGGCCGTCGGCCGCCTCGCCGACCGGGTCAGCGGTCTC
AACCGCCACCTGCTGTTCGACGGTCCGGCGGCCAGCAGCCTGACCCCGGAACGCCTGCTCACGCTGTTCTCC
ACCCAGCCCCGGAAGAACGCGGAGGCCAGCCGATGA
Translation:
MTVAERLCATPCGPAIEFAGIDLSLGGSRILDGVRLRVEAGSVHALVGPNGGGKSSLVKTLLGQMPHRGELR
LEWPGAPGCIGYVPQALEFDRGLPLTVDDFMAAMCQRRPAFLGLSRSRRPAIDAALERVGMLAKRGRRMGAL
SGGERQRVLLAQGLVPPPQLLVLDEPMSALDEGGIQVFERLLLDWRQAGVTVLWIEHDLEAVGRLADRVSGL
NRHLLFDGPAASSLTPERLLTLFSTQPRKNAEASR*
AnnotationID:3200GeneID:3192
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 10:10:44
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:PA2408
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:ABC-type Mn/Zn transport systems, ATPase component
Functional Category Confidence Code:5
COGs:COG1121,cd00267
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69396.1|AE016576_6 (AE016788) cation ABC transporter, ATP-binding protein, putative
           [Pseudomonas putida KT2440]
          Length = 248

 Score =  374 bits (960), Expect = e-103
 Identities = 192/249 (77%), Positives = 210/249 (84%), Gaps = 1/249 (0%)

>gb|AAO55657.1| (AE016863) cation ABC transporter, ATP-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 250

 Score =  364 bits (935), Expect = e-100
 Identities = 183/246 (74%), Positives = 207/246 (84%)

>gb|AAL93910.1| (AE010483) Manganese transport system ATP-binding protein mntA
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 229

 Score =  210 bits (535), Expect = 5e-54
 Identities = 100/227 (44%), Positives = 153/227 (67%), Gaps = 1/227 (0%)








 
Structural Features:
COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 254 residues,  97.2% aligned
Score =  244 bits (624), Expect = 8e-66
Identities = 98/247 (39%), Positives = 131/247 (53%), Gaps = 7/247 (2%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain
CD-Length = 217 residues, 100.0% aligned
Score =  125 bits (316), Expect = 4e-30
Identities = 77/228 (33%), Positives = 111/228 (48%), Gaps = 22/228 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6387




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23529




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32952




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3192_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3192
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5152
                           PA2408_tr
                           translation of PA2408
                           251
                           99.60
                           99.60
                           0
                           1282.0
     

     
     
144980
                           gb|AAG05796.1|AE004668_6
                           (AE004668) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           251
                           99.60
                           99.60
                           0
                           1282.0
     

     
     
144981
                           gb|AAN69396.1|AE016576_6
                           (AE016788) cation ABC transporter, ATP-binding protein, putative [Pseudomonas putida KT2440]
                           251
                           76.49
                           83.66
                           3
                           962.0
     

     
     
144982
                           gb|AAO55657.1|
                           (AE016863) cation ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           251
                           72.90
                           82.47
                           1
                           933.0
     

     
     
144983
                           gb|AAL93910.1|
                           (AE010483) Manganese transport system ATP-binding protein mntA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
                           251
                           39.84
                           60.95
                           22
                           532.0
     

     






      

          
GC ORFID: 46194How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2408Glimmer Score: 

          
Start: 2001233Stop: 2001988

          
Length: 756


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2408 translation of PA2408Homolog Bit Score 498.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene485 (ORF: BLASTX 365.0), psyr_15may02_Scaffold13_revised_gene2221 (ORF: BLASTX 108.0), t_PA2408 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGTGGCCGAACGGCTTTGCGCCACGCCTTGCGGGCCGGCCATCGAGTTCGCCGGGATCGACCTGAGC 
CTCGGCGGCAGCCGCATCCTCGATGGCGTGCGCCTGCGCGTCGAGGCCGGTAGCGTGCACGCGCTGGTCGGA 
CCGAACGGCGGCGGCAAGAGTTCGCTGGTCAAGACCCTGCTCGGGCAGATGCCGCATCGCGGCGAGCTGCGC 
CTGGAGTGGCCCGGCGCGCCCGGCTGCATCGGCTACGTGCCGCAGGCGCTGGAGTTCGACCGCGGCCTGCCG 
CTCACCGTCGACGATTTCATGGCCGCCATGTGCCAGCGCCGTCCGGCCTTCCTCGGCCTGTCGCGCAGCCGG 
CGCCCGGCGATCGACGCGGCCCTGGAGCGGGTCGGCATGCTGGCCAAGCGCGGTCGGCGCATGGGCGCCCTC 
TCCGGCGGCGAGCGCCAGCGCGTGCTGCTGGCCCAGGGCCTGGTACCGCCGCCGCAACTGCTGGTGCTGGAC 
GAACCGATGTCGGCCCTCGACGAGGGCGGCATCCAGGTCTTCGAGCGGCTGCTGCTGGACTGGCGCCAGGCC 
GGCGTCACCGTGCTCTGGATCGAGCACGACCTGGAGGCCGTCGGCCGCCTCGCCGACCGGGTCAGCGGTCTC 
AACCGCCACCTGCTGTTCGACGGTCCGGCGGCCAGCAGCCTGACCCCGGAACGCCTGCTCACGCTGTTCTCC 
ACCCAGCCCCGGAAGAACGCGGAGGCCAGCCGATGA