ViewGene
Locus Name:
GeneID:
Location:

GeneID:3191
TrivialName: PA14_43660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43660
PAO1 Ortholog Locus:PA1612
Sequence Length:759
Protein Length:252
Start: 3887191
Stop: 3887949
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05001.1|AE004589_4 (AE004589) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 250/252 (99%), Positives = 250/252 (99%)
Sequence:
GTGGAACTGCGCACGCCCGCGGCCCTGGCGGAGGGGATGGTCTTCACCGACGACACCCGCCTGCTCCTGCTC
GGCCCCGAGGCCCTGGCCTGGCGCCTGCGCCAGCACCGGGCGCCACCGACCCTGGCGCTGCTGCTCAACCGG
GTCGATGGCCAGCGCCTGCTGCCAGGCGCCAACGGGCATGGCGGACACGGCGTCGGAGGGCTCTGCGTACTC
TGGAGCGACCCGCCGGCGGCCCGCCAGCTCCGCCTGGCGCGCCTGATCCTGCCGGGCATCCAGCGCATCGGC
GTGCTCTACGGCAAGGACAGCGAATTCCTCCTCGACGAGCTTCGCCGCGAGGCCCGCAGCCAGGGGCTCGAG
CTGTTCGTCGCCAGCAGCAGCGGCAACGACGACCCGCGCCCGCTGCAGTTCCTGCTCGGCAATAGTGACCTG
CTGCTCGGCATCGACGACAAACAGCTGTACAACTCGCAGAGCATCAAGAGCCTGCTGCTCGGCAGCTACGCC
AAGAACCGCGCGCTGCTCGGACCCACCGCAGCCTTCGTCAAGGCCGGCAGCCTGGCGAGCAGCTACAGCGAC
CAGGAGGACTGGCTGGACACCCTCGACGAACTGCTCGGCCAGGCGCCCAGGCACTGGCCCCTCAGCCTCTAT
CCAGGGCATTTCAAGGTGCTCGGCAATCGGCAGGTAGCCCGTTCCCTGGGTATCGACCTGGCCAGCGACGCC
GACCTCGGCCGGCGCCTCGCCGAAGGAGAAGAACCATGA
Translation:
MELRTPAALAEGMVFTDDTRLLLLGPEALAWRLRQHRAPPTLALLLNRVDGQRLLPGANGHGGHGVGGLCVL
WSDPPAARQLRLARLILPGIQRIGVLYGKDSEFLLDELRREARSQGLELFVASSSGNDDPRPLQFLLGNSDL
LLGIDDKQLYNSQSIKSLLLGSYAKNRALLGPTAAFVKAGSLASSYSDQEDWLDTLDELLGQAPRHWPLSLY
PGHFKVLGNRQVARSLGIDLASDADLGRRLAEGEEP*
AnnotationID:3199GeneID:3191
AnnotatorUID: diggins
Modification Date/Time: 2005-02-26 19:07:52
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter substrate-binding protein
Cell Localization:()
Synonyms:PA1612
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2984
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2984, ABC-type uncharacterized transport system, 
periplasmic component
CD-Length = 322 residues,  85.4% aligned
Score =  191 bits (487), Expect = 6e-50
Identities = 79/279 (28%), Positives = 119/279 (42%), Gaps = 33/279 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14759




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23527




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37215




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3191_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3191
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5151
                           PA1612_tr
                           translation of PA1612
                           252
                           99.20
                           99.20
                           0
                           1281.0
     

     
     
144978
                           gb|AAG05001.1|AE004589_4
                           (AE004589) hypothetical protein PA1612 [Pseudomonas aeruginosa PAO1]
                           252
                           98.80
                           99.20
                           0
                           1278.0
     

     
     
144979
                           gb|AAN69753.1|AE016611_11
                           (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
                           302
                           42.38
                           52.64
                           56
                           597.0
     

     






      

          
GC ORFID: 46193How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1612Glimmer Score: 

          
Start: 1066718Stop: 1065960

          
Length: 759


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1612 translation of PA1612Homolog Bit Score 498.0

          
Other Homologs:  t_PA1612 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGAACTGCGCACGCCCGCGGCCCTGGCGGAGGGGATGGTCTTCACCGACGACACCCGCCTGCTCCTGCTC 
GGCCCCGAGGCCCTGGCCTGGCGCCTGCGCCAGCACCGGGCGCCACCGACCCTGGCGCTGCTGCTCAACCGG 
GTCGATGGCCAGCGCCTGCTGCCAGGCGCCAACGGGCATGGCGGACACGGCGTCGGAGGGCTCTGCGTACTC 
TGGAGCGACCCGCCGGCGGCCCGCCAGCTCCGCCTGGCGCGCCTGATCCTGCCGGGCATCCAGCGCATCGGC 
GTGCTCTACGGCAAGGACAGCGAATTCCTCCTCGACGAGCTTCGCCGCGAGGCCCGCAGCCAGGGGCTCGAG 
CTGTTCGTCGCCAGCAGCAGCGGCAACGACGACCCGCGCCCGCTGCAGTTCCTGCTCGGCAATAGTGACCTG 
CTGCTCGGCATCGACGACAAACAGCTGTACAACTCGCAGAGCATCAAGAGCCTGCTGCTCGGCAGCTACGCC 
AAGAACCGCGCGCTGCTCGGACCCACCGCAGCCTTCGTCAAGGCCGGCAGCCTGGCGAGCAGCTACAGCGAC 
CAGGAGGACTGGCTGGACACCCTCGACGAACTGCTCGGCCAGGCGCCCAGGCACTGGCCCCTCAGCCTCTAT 
CCAGGGCATTTCAAGGTGCTCGGCAATCGGCAGGTAGCCCGTTCCCTGGGTATCGACCTGGCCAGCGACGCC 
GACCTCGGCCGGCGCCTCGCCGAAGGAGAAGAACCATGA