ViewGene

Locus Name:
GeneID:
Location:

GeneID:319
TrivialName: PA14_57170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57170
PAO1 Ortholog Locus:PA4398
Sequence Length:2097
Protein Length:698
Start: 5091554
Stop: 5093650
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07786.1|AE004855_8 (AE004855) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 697/698 (99%), Positives = 697/698 (99%)
Sequence:
ATGAACCTGCGCCAGCGCCTCGACAACCTGCCCGTAGGGCAGAAACTGCTCGCCGCCCTGCTGATCCTGCTG
GCCACCGTGCTGCTGGTGGCCAACCTGGCGTTCATCAGCGCCGCCTACTGGATTTCCCAGGAGAGCGTCGCC
CCCCAGGCGATGCAGACCATCGGCCGGCTGATCGCCAACCCGGCGCTCAGCCAGCCGGCACTCAGTTCGCCG
CAGACCGCCGAGGTCCTGCTGCGCCAGCTCAACGATTACCAGCCGTTGCGCGCCGCGGCCCTGTACGACAGC
AATGGGCTGATGCTGGCCGACCTGCAACGCGGCGACACCCTCAAGCTGCCGACCCGCCTGGACCGCCTGGAG
CACTGGAGGCGCGGCGAGTACCGCCTCAACGCGCTGATCGAACTGCCCCAGGAAAACGCCCGCCCCGGCTAC
CTGCTGCTGGTGGCCAGCGGCGAACTGCCGAGCGCGTTCTACACCGGAACCCTCACCGCCAGCCTGGCGATC
CTCGGCGTCAGCGTGCTGCTCTGGCTGCTGGTGGCGCAGCAGATACGCCGCCTGATCACCCGGCCGATCCGC
GATCTCGAGGAACTGTCGCGACAGGTCACCCGCGAGGAGAACTACGCCCTCCGCGCCCAGCGCGGCAACGGC
GACGAAATCGGCCGCCTGGCCGACGCGTTCAACACCATGCTGACCCGCATCGAGGCCCGCGAGCAGCAGCTC
AAGCGCGCCCGCGACGATGCCCAGGAAGCGGTCGAGCAGGCCCAGAGCCTGGCCGAGGAAACCCGCCGCTCG
AACCGCAAGCTGGAACTGGAAGTGCAGGTGCGCAGCAAGATCGAGAAGAAGCTCACCGGTTTCCAGCACTAC
CTCAACAGCATCATCGACTCCATGCCTTCGGCGCTGATCGCGGTGGACGAGCAACTCTACGTCACGCAGTGG
AACCAGGAGGCCAGCCAGCTTTCCGGCACCAGCCTGGACGATGCGGTCAACCAGCCGGTGTTCCTCGCCTTT
CCCTCGCTAAAGCCGTTCCTTCCGCAGCTCACCCGGGCTGCCGAGAAGCACAGCGTGGAGCGTGTCGAACGG
GTCACCTGGGCGCTGATCGACACGCCACGCCACTACGCCCTGACCTTCTACCCGCTGATGGGCGGCACCGGC
CGCGGCGCGGTGATCCGCATCGATGACATCACCCAGCGGCTGAGCCTGGAAGAAGTGATGGTGCAATCGGAG
AAGATGCTCTCGGTCGGCAGCCTCGCCGCCGGCATGGCCCACGAGATCAACAACCCGCTCGGCGCGATCCTG
CACAACGTGCAGAACATCAAGCGGCGCCTGTCCCCGGAGCTGGCGAAGAACGTCGAGCTGGCGGCCGAGGTC
GGAGTGCCGCTGGAAGACATCAATCACTACCTCGACGGCCGCGACATCCCGCGCCTGCTGGAAGGCATCCAG
CACGCCGGCTCGCGGGCAGCGAAGATCGTCACCCACATGCTCGCCTTCAGCCGCCGCAGCCACCGGCAGATG
ACCGCTTGCGAACTGCCCGCACTGCTCGAACAGGCGGTGGAAATCGCCGGCAACGACTTCGACCTGGCCGAA
GGCTTCGACTTCAAGTCGTTGCAGATCGTCCACGAGTTCGATCCCAACCTCGGCCCGGTGCCGGTGATCGCC
AACGAGGTCGAGCAGGTCCTGCTCAACCTGCTGAAGAACGCCGCCCAGGCCATCCACCAGCGCGACGACGAA
GAGGAAGGCGAACAGGGTCGGATCGTCCTGCGCACGCGCCTGACGCCGCCCTGGGCGGAAGTCCAGGTGGAA
GACAACGGCAGCGGCATGCCCGAACTGGTGCGCAAGCGTATCTTCGAGCCGTTCTTCACCACCAAGGAAGTC
GGCCAGGGCACCGGTCTCGGCCTGTCCGTCTCGTATTTCATCATCACCAACAATCACAAGGGCCAGATGGAA
GTACGTTCGGAACTGGGCCGCGGCACCTGCTTCAGCATCCGCCTGCCGCTGGAAAGCTCCGAAGCGGTCGCC
CCGGCACAAGCCAAGGCCCTGCCGCCCGCTCTGCCGCAACCCGGTAGCAGCCTGCGGCGGGGCGACGAAGAG
GAAGGTTGA
Translation:
MNLRQRLDNLPVGQKLLAALLILLATVLLVANLAFISAAYWISQESVAPQAMQTIGRLIANPALSQPALSSP
QTAEVLLRQLNDYQPLRAAALYDSNGLMLADLQRGDTLKLPTRLDRLEHWRRGEYRLNALIELPQENARPGY
LLLVASGELPSAFYTGTLTASLAILGVSVLLWLLVAQQIRRLITRPIRDLEELSRQVTREENYALRAQRGNG
DEIGRLADAFNTMLTRIEAREQQLKRARDDAQEAVEQAQSLAEETRRSNRKLELEVQVRSKIEKKLTGFQHY
LNSIIDSMPSALIAVDEQLYVTQWNQEASQLSGTSLDDAVNQPVFLAFPSLKPFLPQLTRAAEKHSVERVER
VTWALIDTPRHYALTFYPLMGGTGRGAVIRIDDITQRLSLEEVMVQSEKMLSVGSLAAGMAHEINNPLGAIL
HNVQNIKRRLSPELAKNVELAAEVGVPLEDINHYLDGRDIPRLLEGIQHAGSRAAKIVTHMLAFSRRSHRQM
TACELPALLEQAVEIAGNDFDLAEGFDFKSLQIVHEFDPNLGPVPVIANEVEQVLLNLLKNAAQAIHQRDDE
EEGEQGRIVLRTRLTPPWAEVQVEDNGSGMPELVRKRIFEPFFTTKEVGQGTGLGLSVSYFIITNNHKGQME
VRSELGRGTCFSIRLPLESSEAVAPAQAKALPPALPQPGSSLRRGDEEEG*
AnnotationID:329GeneID:319
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 13:01:33
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA4398
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3852,smart00387,cd00075
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66973.1|AE016325_9 (AE016779) sensory box histidine kinase/response regulator
           [Pseudomonas putida KT2440]
          Length = 676

 Score =  971 bits (2511), Expect = 0.0
 Identities = 496/677 (73%), Positives = 568/677 (83%), Gaps = 2/677 (0%)

>gb|AAO57844.1| (AE016871) sensory box histidine kinase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 678

 Score =  948 bits (2450), Expect = 0.0
 Identities = 484/669 (72%), Positives = 562/669 (84%), Gaps = 2/669 (0%)
Structural Features:
COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific 
[Signal transduction mechanisms]
CD-Length = 363 residues,  94.8% aligned
Score =  136 bits (343), Expect = 2e-32
Identities = 96/385 (24%), Positives = 163/385 (42%), Gaps = 51/385 (13%)

smart00387, HATPase_c, Histidine kinase-like ATPases
CD-Length = 112 residues,  97.3% aligned
Score = 96.9 bits (241), Expect = 2e-20
Identities = 47/118 (39%), Positives = 62/118 (52%), Gaps = 12/118 (10%)

cd00075, HATPase_c, Histidine kinase-like ATPases
CD-Length = 103 residues, 100.0% aligned
Score = 88.1 bits (218), Expect = 6e-18
Identities = 46/111 (41%), Positives = 62/111 (55%), Gaps = 10/111 (9%)
Genomic Context:
Comment:
ReferenceID:641
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17783
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:27541
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:319_cdd.html
URL:
Homologs By Global Alignment
Gene ID:319

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
528 PA4398_tr translation of PA4398 698 99.85 99.85 0 3494.0
26066 gb|AAG07786.1|AE004855_8 (AE004855) probable two-component sensor [Pseudomonas aeruginosa PAO1] 698 99.85 99.85 0 3494.0
26067 gb|AAN66973.1|AE016325_9 (AE016779) sensory box histidine kinase/response regulator [Pseudomonas putida KT2440] 698 71.06 81.37 22 2512.0
26068 gb|AAO57844.1| (AE016871) sensory box histidine kinase [Pseudomonas syringae pv. tomato str. DC3000] 700 69.42 80.85 24 2449.0
26069 gb|AAF70458.1|AF229814_1 (AF229814) putative histidine kinase [Pseudomonas aeruginosa] 704 11.07 15.62 530 277.0
GC ORFID: 43321How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4398Glimmer Score:
Start: 4355230Stop: 4357326
Length: 2097
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4398 translation of PA4398Homolog Bit Score 1350.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene316 (ORF: BLASTX 973.0), t_PA4398 (ORF: GLIMMER)
GC ORF Sequence
ATGAACCTGCGCCAGCGCCTCGACAACCTGCCCGTAGGGCAGAAACTGCTCGCCGCCCTGCTGATCCTGCTG
GCCACCGTGCTGCTGGTGGCCAACCTGGCGTTCATCAGCGCCGCCTACTGGATTTCCCAGGAGAGCGTCGCC
CCCCAGGCGATGCAGACCATCGGCCGGCTGATCGCCAACCCGGCGCTCAGCCAGCCGGCACTCAGTTCGCCG
CAGACCGCCGAGGTCCTGCTGCGCCAGCTCAACGATTACCAGCCGTTGCGCGCCGCGGCCCTGTACGACAGC
AATGGGCTGATGCTGGCCGACCTGCAACGCGGCGACACCCTCAAGCTGCCGACCCGCCTGGACCGCCTGGAG
CACTGGAGGCGCGGCGAGTACCGCCTCAACGCGCTGATCGAACTGCCCCAGGAAAACGCCCGCCCCGGCTAC
CTGCTGCTGGTGGCCAGCGGCGAACTGCCGAGCGCGTTCTACACCGGAACCCTCACCGCCAGCCTGGCGATC
CTCGGCGTCAGCGTGCTGCTCTGGCTGCTGGTGGCGCAGCAGATACGCCGCCTGATCACCCGGCCGATCCGC
GATCTCGAGGAACTGTCGCGACAGGTCACCCGCGAGGAGAACTACGCCCTCCGCGCCCAGCGCGGCAACGGC
GACGAAATCGGCCGCCTGGCCGACGCGTTCAACACCATGCTGACCCGCATCGAGGCCCGCGAGCAGCAGCTC
AAGCGCGCCCGCGACGATGCCCAGGAAGCGGTCGAGCAGGCCCAGAGCCTGGCCGAGGAAACCCGCCGCTCG
AACCGCAAGCTGGAACTGGAAGTGCAGGTGCGCAGCAAGATCGAGAAGAAGCTCACCGGTTTCCAGCACTAC
CTCAACAGCATCATCGACTCCATGCCTTCGGCGCTGATCGCGGTGGACGAGCAACTCTACGTCACGCAGTGG
AACCAGGAGGCCAGCCAGCTTTCCGGCACCAGCCTGGACGATGCGGTCAACCAGCCGGTGTTCCTCGCCTTT
CCCTCGCTAAAGCCGTTCCTTCCGCAGCTCACCCGGGCTGCCGAGAAGCACAGCGTGGAGCGTGTCGAACGG
GTCACCTGGGCGCTGATCGACACGCCACGCCACTACGCCCTGACCTTCTACCCGCTGATGGGCGGCACCGGC
CGCGGCGCGGTGATCCGCATCGATGACATCACCCAGCGGCTGAGCCTGGAAGAAGTGATGGTGCAATCGGAG
AAGATGCTCTCGGTCGGCAGCCTCGCCGCCGGCATGGCCCACGAGATCAACAACCCGCTCGGCGCGATCCTG
CACAACGTGCAGAACATCAAGCGGCGCCTGTCCCCGGAGCTGGCGAAGAACGTCGAGCTGGCGGCCGAGGTC
GGAGTGCCGCTGGAAGACATCAATCACTACCTCGACGGCCGCGACATCCCGCGCCTGCTGGAAGGCATCCAG
CACGCCGGCTCGCGGGCAGCGAAGATCGTCACCCACATGCTCGCCTTCAGCCGCCGCAGCCACCGGCAGATG
ACCGCTTGCGAACTGCCCGCACTGCTCGAACAGGCGGTGGAAATCGCCGGCAACGACTTCGACCTGGCCGAA
GGCTTCGACTTCAAGTCGTTGCAGATCGTCCACGAGTTCGATCCCAACCTCGGCCCGGTGCCGGTGATCGCC
AACGAGGTCGAGCAGGTCCTGCTCAACCTGCTGAAGAACGCCGCCCAGGCCATCCACCAGCGCGACGACGAA
GAGGAAGGCGAACAGGGTCGGATCGTCCTGCGCACGCGCCTGACGCCGCCCTGGGCGGAAGTCCAGGTGGAA
GACAACGGCAGCGGCATGCCCGAACTGGTGCGCAAGCGTATCTTCGAGCCGTTCTTCACCACCAAGGAAGTC
GGCCAGGGCACCGGTCTCGGCCTGTCCGTCTCGTATTTCATCATCACCAACAATCACAAGGGCCAGATGGAA
GTACGTTCGGAACTGGGCCGCGGCACCTGCTTCAGCATCCGCCTGCCGCTGGAAAGCTCCGAAGCGGTCGCC
CCGGCACAAGCCAAGGCCCTGCCGCCCGCTCTGCCGCAACCCGGTAGCAGCCTGCGGCGGGGCGACGAAGAG
GAAGGTTGA