ViewGene

Locus Name:
GeneID:
Location:

GeneID:3189
TrivialName: PA14_06190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06190
PAO1 Ortholog Locus:PA0473
Sequence Length:750
Protein Length:249
Start: 546995
Stop: 547744
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03862.1|AE004485_3 (AE004485) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
Identities = 246/249 (98%), Positives = 247/249 (99%)
Sequence:
GTGGCCGAACCTTTGCTGATCATCGGTTCCTATCTGTCCCCCTATGTGCGCAAGGTGCTGGTGCTGCTGGAG
CTGAAAGGCATCGCCTACCGCATCGACCCCATCGTGCCGTTCTTCGGCGACGAGGCCTTCGAGCGCCTCAGT
CCGTTGCGCCAGATTCCGGTGCTGGTGGACGGCGACTTCGTCCTCAACGATTCCAGCGTGATCTGCCAGTAC
CTGGAGGAGCGCTACCCGCAGCCGAGCCTGTATCCCGCCGACATCGGCCAGCGCGCCCAGGCTCGCTGGCTG
GAGGAATACGCCGATTCGCGGCTGGGCCAGGTGATCATCTGGCAGTTGTTCCACCAGTTGGTGATCAACCGT
GGCATCTGGCACCGCGAACCCGACCAGGCGATCCTGCAACGCACCTACGACGAAGACCTGCCATCGATCTGC
AACTACCTGGAAGGGCGGGTCCCGCCAAGCGGCTGGCTGTGCGGCGAGCTATCCATCGCCGATGTCGCCGTC
GCCTGCCTGTTCCGCAATGCCCAGTTGGCGCGCTACCAGGTCGACGGCGAGCGCTGGCCGCGCCTGGCGCGC
CTGTTGGCTGACGCTTTCGCCCTGCCGGCCTTCCAGCATCTGGCGCGTTTCGAGAAGGCCACCGCGCAGACC
CCGGTCGCCGAACAGCGCCAGGCGCTGCGCGAGGCCGGTGCGCCGCTCAGCGCGACCAGCCACGCCCGCGAG
CGGCCGGTGCGCGGTCCGATGAGCCGCTGA
Translation:
MAEPLLIIGSYLSPYVRKVLVLLELKGIAYRIDPIVPFFGDEAFERLSPLRQIPVLVDGDFVLNDSSVICQY
LEERYPQPSLYPADIGQRAQARWLEEYADSRLGQVIIWQLFHQLVINRGIWHREPDQAILQRTYDEDLPSIC
NYLEGRVPPSGWLCGELSIADVAVACLFRNAQLARYQVDGERWPRLARLLADAFALPAFQHLARFEKATAQT
PVAEQRQALREAGAPLSATSHARERPVRGPMSR*
AnnotationID:3197GeneID:3189
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 09:09:09
Gene Name:
Confidence Code:3
GeneProduct:putative glutathione S-transferase
Cell Localization:()
Synonyms:psfA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:putative stress factor A
Functional Category Confidence Code:5
COGs:COG0625
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0625, Gst, Glutathione S-transferase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 211 residues,  99.1% aligned
Score =  111 bits (279), Expect = 6e-26
Identities = 65/217 (29%), Positives = 92/217 (42%), Gaps = 15/217 (6%)
Genomic Context:
Comment:
ReferenceID:14757
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23523
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33788
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3189_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3189

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5142 PA0473_tr translation of PA0473 249 98.79 99.19 0 1284.0
144486 gb|AAG03862.1|AE004485_3 (AE004485) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1] 249 98.39 99.19 0 1281.0
144487 gb|AAC06217.1| (AF051691) stress factor A [Pseudomonas aeruginosa] 249 95.18 96.38 0 1229.0
GC ORFID: 46191How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0473Glimmer Score:
Start: 6348337Stop: 6349086
Length: 750
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0473 translation of PA0473Homolog Bit Score 499.0
Other Homologs: t_PA0473 (ORF: GLIMMER)
GC ORF Sequence
GTGGCCGAACCTTTGCTGATCATCGGTTCCTATCTGTCCCCCTATGTGCGCAAGGTGCTGGTGCTGCTGGAG
CTGAAAGGCATCGCCTACCGCATCGACCCCATCGTGCCGTTCTTCGGCGACGAGGCCTTCGAGCGCCTCAGT
CCGTTGCGCCAGATTCCGGTGCTGGTGGACGGCGACTTCGTCCTCAACGATTCCAGCGTGATCTGCCAGTAC
CTGGAGGAGCGCTACCCGCAGCCGAGCCTGTATCCCGCCGACATCGGCCAGCGCGCCCAGGCTCGCTGGCTG
GAGGAATACGCCGATTCGCGGCTGGGCCAGGTGATCATCTGGCAGTTGTTCCACCAGTTGGTGATCAACCGT
GGCATCTGGCACCGCGAACCCGACCAGGCGATCCTGCAACGCACCTACGACGAAGACCTGCCATCGATCTGC
AACTACCTGGAAGGGCGGGTCCCGCCAAGCGGCTGGCTGTGCGGCGAGCTATCCATCGCCGATGTCGCCGTC
GCCTGCCTGTTCCGCAATGCCCAGTTGGCGCGCTACCAGGTCGACGGCGAGCGCTGGCCGCGCCTGGCGCGC
CTGTTGGCTGACGCTTTCGCCCTGCCGGCCTTCCAGCATCTGGCGCGTTTCGAGAAGGCCACCGCGCAGACC
CCGGTCGCCGAACAGCGCCAGGCGCTGCGCGAGGCCGGTGCGCCGCTCAGCGCGACCAGCCACGCCCGCGAG
CGGCCGGTGCGCGGTCCGATGAGCCGCTGA