ViewGene
Locus Name:
GeneID:
Location:

GeneID:3188
TrivialName: PA14_04090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04090
PAO1 Ortholog Locus:PA0314
Sequence Length:771
Protein Length:256
Start: 368608
Stop: 367838
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03703.1|AE004469_8 (AE004469) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 253/256 (98%), Positives = 255/256 (99%)
Sequence:
ATGCGATTTCTGCCCCGCCTGCTGATGCTGGTATCCCTGGCCGCCCCGCTGGCCCATGCCGAGCTGCTCGAC
GACGTCCACCAGCGCGGCGCCCTGCGCATCGCCCTGGAGGGCACCTATCCGCCGTTCAACTTCAAGCAGGGC
GGCAAGCTCACCGGCTTCGAGACCGAACTGGGCGAACTGCTGGCCGCCGAGCTGGAGGTCAAGCCGGAATTC
GTCACCACCGAATGGAGCGGCATCCTCGCCGGCCTGCAGAGCGGCAAGTACGACATCGCGCTGAACCAGGTC
TCGGTGAACGAGCAGCGGCGCAAGGTCTTCGACTTCAGCGAGCCGTACACCATCTCCAGCGCCCAGTTGATC
GTGCGCGCCGACGACACCCGCCAGTTCAGGTCGCTGGAAGACCTCAAGGGCCTCAAGCTCGGCGTCGGCCAG
GGCACCAACTACGCCGACCTGGCGAAGTCGGTGGCCGGCGTCAACGTGCGCACCTATCCGGGCGCCCCGGAA
TACCTGCAGGACCTGGCCAGCAAACGCATCGACGCGGCGCTCAACGACCGCCTGCTGATCCCCTTCGCCATC
CGCGAGGCCAAGCTCCCGGTCAAGCCCGGCGCGGCGGTGGGACCGGTGGCGAACATGGCGATTCCCTACCGG
AAGAACAACCCGAAGTTCGGCGAGGCGCTGAACGCGGCGCTGGAGAAGATCAAGGCCGACGGCCGCTTCGCC
AAGCTCTCGGAAAAGTGGTTCGGCCTGGACGTCAGCCAGCCGCCGAAGTGA
Translation:
MRFLPRLLMLVSLAAPLAHAELLDDVHQRGALRIALEGTYPPFNFKQGGKLTGFETELGELLAAELEVKPEF
VTTEWSGILAGLQSGKYDIALNQVSVNEQRRKVFDFSEPYTISSAQLIVRADDTRQFRSLEDLKGLKLGVGQ
GTNYADLAKSVAGVNVRTYPGAPEYLQDLASKRIDAALNDRLLIPFAIREAKLPVKPGAAVGPVANMAIPYR
KNNPKFGEALNAALEKIKADGRFAKLSEKWFGLDVSQPPK*
AnnotationID:3196GeneID:3188
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 12:12:03
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC transporter
Cell Localization:()
Synonyms:fliY
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative periplasmic binding transport protein
Functional Category Confidence Code:5
COGs:pfam00497,smart00062,cd00134,COG0834
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3. 
CD-Length = 224 residues,  99.6% aligned
Score =  206 bits (526), Expect = 2e-54
Identities = 94/224 (41%), Positives = 131/224 (58%), Gaps = 8/224 (3%)

smart00062, PBPb, Bacterial periplasmic substrate-binding proteins
CD-Length = 222 residues,  99.5% aligned
Score =  165 bits (419), Expect = 5e-42
Identities = 82/225 (36%), Positives = 122/225 (54%), Gaps = 10/225 (4%)

cd00134, PBPb, Bacterial periplasmic transport system
CD-Length = 218 residues, 100.0% aligned
Score =  155 bits (392), Expect = 6e-39
Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 6/220 (2%)

COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, 
periplasmic component/domain 
[Amino acid transport and metabolism / Signal transduction mechanisms]
CD-Length = 275 residues,  97.5% aligned
Score =  162 bits (409), Expect = 5e-41
Identities = 93/268 (34%), Positives = 132/268 (49%), Gaps = 12/268 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6379




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23521




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33660




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3188_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3188
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5141
                           PA0314_tr
                           translation of PA0314
                           256
                           98.82
                           99.60
                           0
                           1284.0
     

     
     
144465
                           gb|AAG03703.1|AE004469_8
                           (AE004469) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           256
                           98.82
                           99.60
                           0
                           1284.0
     

     
     
144466
                           gb|AAQ61713.1|
                           (AE016924) probable amino acid ABC transporter, periplasmic-binding protein [Chromobacterium violaceum ATCC 12472]
                           261
                           62.06
                           77.77
                           5
                           832.0
     

     
     
144478
                           dbj|BAB36082.1|
                           (AP002559) putative periplasmic binding transport protein [Escherichia coli O157:H7]
                           272
                           41.17
                           58.45
                           22
                           469.0
     

     
     
144477
                           gb|AAG56935.1|AE005414_12
                           (AE005414) putative periplasmic binding transport protein [Escherichia coli O157:H7 EDL933]
                           272
                           41.17
                           58.45
                           22
                           469.0
     

     






      

          
GC ORFID: 46190How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0314Glimmer Score: 

          
Start: 6169950Stop: 6169180

          
Length: 771


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0314 translation of PA0314Homolog Bit Score 499.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3823 (ORF: BLASTX 189.0), t_PA0314 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGATTTCTGCCCCGCCTGCTGATGCTGGTATCCCTGGCCGCCCCGCTGGCCCATGCCGAGCTGCTCGAC 
GACGTCCACCAGCGCGGCGCCCTGCGCATCGCCCTGGAGGGCACCTATCCGCCGTTCAACTTCAAGCAGGGC 
GGCAAGCTCACCGGCTTCGAGACCGAACTGGGCGAACTGCTGGCCGCCGAGCTGGAGGTCAAGCCGGAATTC 
GTCACCACCGAATGGAGCGGCATCCTCGCCGGCCTGCAGAGCGGCAAGTACGACATCGCGCTGAACCAGGTC 
TCGGTGAACGAGCAGCGGCGCAAGGTCTTCGACTTCAGCGAGCCGTACACCATCTCCAGCGCCCAGTTGATC 
GTGCGCGCCGACGACACCCGCCAGTTCAGGTCGCTGGAAGACCTCAAGGGCCTCAAGCTCGGCGTCGGCCAG 
GGCACCAACTACGCCGACCTGGCGAAGTCGGTGGCCGGCGTCAACGTGCGCACCTATCCGGGCGCCCCGGAA 
TACCTGCAGGACCTGGCCAGCAAACGCATCGACGCGGCGCTCAACGACCGCCTGCTGATCCCCTTCGCCATC 
CGCGAGGCCAAGCTCCCGGTCAAGCCCGGCGCGGCGGTGGGACCGGTGGCGAACATGGCGATTCCCTACCGG 
AAGAACAACCCGAAGTTCGGCGAGGCGCTGAACGCGGCGCTGGAGAAGATCAAGGCCGACGGCCGCTTCGCC 
AAGCTCTCGGAAAAGTGGTTCGGCCTGGACGTCAGCCAGCCGCCGAAGTGA