ViewGene
Locus Name:
GeneID:
Location:

GeneID:3186
TrivialName: PA14_68060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68060
PAO1 Ortholog Locus:PA5152
Sequence Length:774
Protein Length:257
Start: 6072697
Stop: 6073470
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08537.1|AE004928_3 (AE004928) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 257/257 (100%), Positives = 257/257 (100%)
Sequence:
ATGGCCGAGGCCACCCCCGCACTGGAAATCCGTAACCTGCACAAGCGCTACGGCGACCTCGAAGTGCTCAAG
GGCATCTCCCTCACCGCCCGCGACGGCGACGTGATCTCCATCCTCGGATCGTCCGGCTCGGGCAAATCCACC
TTCCTGCGCTGCATCAACCTGCTGGAGAACCCGCACCAGGGCCAGATCCTGGTCTCCGGCGAAGAGCTGCGC
CTGAAGAAGAGCAAGAACGGCGACCTGGTCGCCGCCGACAGCCAGCAGATCAACCGGCTGCGCAGCGAACTC
GGTTTCGTCTTCCAGAATTTCAACCTGTGGCCGCACATGAGCATCCTCGACAACGTGATCGAGGCGCCGCGT
CGCGTACTGGGCAAGAGCAAGGCCGAAGCGATCGAGATCGCCGAGGGCCTGCTGGCCAAGGTCGGCATCGCC
GACAAGCGCCACAGCTATCCCGCGCAACTTTCCGGCGGCCAGCAGCAGCGCGCGGCCATCGCCCGGACCCTG
GCCATGCAACCCAAGGTGATCCTGTTCGACGAGCCCACCTCGGCGCTCGACCCGGAAATGGTACAGGAAGTG
CTTAACGTGATCCGTGCGCTCGCCGAAGAGGGCCGGACCATGCTGCTGGTCACCCACGAAATGAGCTTCGCC
CGCCAGGTTTCCAGCGAGGTGGTATTCCTCCACCAGGGCCTGGTAGAAGAGCAGGGAACGCCGCAACAGGTT
TTCGAAAACCCCCAGTCGGCGCGCTGCAAACAGTTCATGTCCAGCCACCGCTAA
Translation:
MAEATPALEIRNLHKRYGDLEVLKGISLTARDGDVISILGSSGSGKSTFLRCINLLENPHQGQILVSGEELR
LKKSKNGDLVAADSQQINRLRSELGFVFQNFNLWPHMSILDNVIEAPRRVLGKSKAEAIEIAEGLLAKVGIA
DKRHSYPAQLSGGQQQRAAIARTLAMQPKVILFDEPTSALDPEMVQEVLNVIRALAEEGRTMLLVTHEMSFA
RQVSSEVVFLHQGLVEEQGTPQQVFENPQSARCKQFMSSHR*
AnnotationID:3194GeneID:3186
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 13:01:26
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid ABC transporter, ATP-binding protein
Cell Localization:()
Synonyms:PA5152
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4598,COG1126,COG4161
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58782.1| (AE016875) amino acid ABC transporter, ATP-binding protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 257

 Score =  465 bits (1197), Expect = e-130
 Identities = 233/257 (90%), Positives = 250/257 (97%)

>gb|AAN65914.1|AE016219_7 (AE016775) amino acid ABC transporter, ATP-binding protein
           [Pseudomonas putida KT2440]
          Length = 257

 Score =  459 bits (1180), Expect = e-129
 Identities = 231/257 (89%), Positives = 247/257 (96%)

>gb|AAF95012.1| (AE004262) amino acid ABC transporter, ATP-binding protein [Vibrio
           cholerae]
          Length = 256

 Score =  330 bits (845), Expect = 6e-90
 Identities = 166/250 (66%), Positives = 204/250 (81%)






 
Structural Features:
COG4598, HisP, ABC-type histidine transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 256 residues,  99.2% aligned
Score =  433 bits (1116), Expect = 7e-123
Identities = 177/254 (69%), Positives = 209/254 (82%)

COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 240 residues,  99.2% aligned
Score =  364 bits (935), Expect = 8e-102
Identities = 143/250 (57%), Positives = 183/250 (73%), Gaps = 12/250 (4%)

COG4161, ArtP, ABC-type arginine transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 242 residues,  99.2% aligned
Score =  231 bits (590), Expect = 7e-62
Identities = 104/248 (41%), Positives = 159/248 (64%), Gaps = 8/248 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6375




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23517




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34919




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3186_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3186
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5131
                           PA5152_tr
                           translation of PA5152
                           257
                           99.99
                           99.99
                           0
                           1284.0
     

     
     
143939
                           gb|AAG08537.1|AE004928_3
                           (AE004928) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           257
                           99.99
                           99.99
                           0
                           1284.0
     

     
     
143940
                           gb|AAO58782.1|
                           (AE016875) amino acid ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           257
                           90.66
                           97.27
                           0
                           1197.0
     

     
     
143941
                           gb|AAN65914.1|AE016219_7
                           (AE016775) amino acid ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           257
                           89.88
                           96.10
                           0
                           1180.0
     

     
     
143944
                           gb|AAF95012.1|
                           (AE004262) amino acid ABC transporter, ATP-binding protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           257
                           64.98
                           80.15
                           1
                           837.0
     

     






      

          
GC ORFID: 46188How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5152Glimmer Score: 

          
Start: 5336383Stop: 5337156

          
Length: 774


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5152 translation of PA5152Homolog Bit Score 499.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6950 (ORF: BLASTX 462.0), t_PA0892 (ORF: BLASTX 337.0), t_PA2926 (ORF: BLASTX 309.0), psyr_15may02_Scaffold5_revised_gene6103 (ORF: BLASTX 292.0), psyr_15may02_Scaffold2_revised_gene3825 (ORF: BLASTX 249.0), psyr_15may02_Scaffold7_revised_gene7435 (ORF: BLASTX 245.0), t_PA1256 (ORF: BLASTX 243.0), psyr_15may02_Scaffold3_revised_gene4390 (ORF: BLASTX 243.0), psyr_15may02_Scaffold2_revised_gene3873 (ORF: BLASTX 239.0), psyr_15may02_Scaffold7_revised_gene7291 (ORF: BLASTX 234.0), psyr_15may02_Scaffold5_revised_gene6133 (ORF: BLASTX 224.0), t_PA5074 (ORF: BLASTX 223.0), t_PA4192 (ORF: BLASTX 219.0), t_PA1339 (ORF: BLASTX 218.0), psyr_15may02_Scaffold7_revised_gene7195 (ORF: BLASTX 207.0), t_PA4594 (ORF: BLASTX 140.0), t_PA5152 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGAGGCCACCCCCGCACTGGAAATCCGTAACCTGCACAAGCGCTACGGCGACCTCGAAGTGCTCAAG 
GGCATCTCCCTCACCGCCCGCGACGGCGACGTGATCTCCATCCTCGGATCGTCCGGCTCGGGCAAATCCACC 
TTCCTGCGCTGCATCAACCTGCTGGAGAACCCGCACCAGGGCCAGATCCTGGTCTCCGGCGAAGAGCTGCGC 
CTGAAGAAGAGCAAGAACGGCGACCTGGTCGCCGCCGACAGCCAGCAGATCAACCGGCTGCGCAGCGAACTC 
GGTTTCGTCTTCCAGAATTTCAACCTGTGGCCGCACATGAGCATCCTCGACAACGTGATCGAGGCGCCGCGT 
CGCGTACTGGGCAAGAGCAAGGCCGAAGCGATCGAGATCGCCGAGGGCCTGCTGGCCAAGGTCGGCATCGCC 
GACAAGCGCCACAGCTATCCCGCGCAACTTTCCGGCGGCCAGCAGCAGCGCGCGGCCATCGCCCGGACCCTG 
GCCATGCAACCCAAGGTGATCCTGTTCGACGAGCCCACCTCGGCGCTCGACCCGGAAATGGTACAGGAAGTG 
CTTAACGTGATCCGTGCGCTCGCCGAAGAGGGCCGGACCATGCTGCTGGTCACCCACGAAATGAGCTTCGCC 
CGCCAGGTTTCCAGCGAGGTGGTATTCCTCCACCAGGGCCTGGTAGAAGAGCAGGGAACGCCGCAACAGGTT 
TTCGAAAACCCCCAGTCGGCGCGCTGCAAACAGTTCATGTCCAGCCACCGCTAA