ViewGene
Locus Name:
GeneID:
Location:

GeneID:3185
TrivialName: PA14_67850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67850
PAO1 Ortholog Locus:PA5138
Sequence Length:753
Protein Length:250
Start: 6059772
Stop: 6059020
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08523.1|AE004927_1 (AE004927) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 250/250 (100%), Positives = 250/250 (100%)
Sequence:
ATGCAAAGAAGCCTGCTCTTCGCGCTGCTCGCAACCCTGCTGTTGGTCGGCGGCGCGCGCGCCGAAACCGAT
CCCGACTACAGCATGGTCCTGCTCACGGAGAACTTCCCGCCGTACAACATGGCGATCAACGGCAAGAACTTC
GCCCAGGAAGACAACATCGACGGCATCGCCGTGGATATCGTCCGCGAGATGTTCAAGCGCGCCGGCATCAAG
TACAGCCTGACCCTGCGTTTCCCCTGGGACCGCATCTACAAGCTGGCGCTGGAGAAGCCCGGCTACGGGGTG
TTCGTCACCGCCCGCCTGGCCGAGCGCGAGGACAAGTTCAAGTGGGTCGGTCCGATCGGCCCGGACGACTGG
GTGCTGCTGGCCAAGGGCGACAGCCCGATCACCCTGGGCAGCCTGGACGAGGCGAAGAAATACCGGATCGGC
GCCTACAAGGGCGATGCCATCGCCGAGTTCCTCGGCAAGAACGGTTTCGAGGCCGACCTGGCGCTACGCGAC
CAGGAAAACGCGCAGAAGCTGGTCAAGGGCCAGATCGACCTCTGGGCCAGCGGCGATCCTGCCGGGCGCTAC
CTGGCCAAGCAGGAAGGCGTGACCGGCCTGAAGACGGTGCTGCGCTTCAACAGCGACCAGCTGTACCTGGCG
CTCAACCGCGAGACTCCCGACGAAGTGGTGCAGAAGCTCCAGGCAGCCCTGGACGGCATGCGCAAGGAAGGC
TTCGTCGAGGACATCCTCAACAGCTATCTCTGA
Translation:
MQRSLLFALLATLLLVGGARAETDPDYSMVLLTENFPPYNMAINGKNFAQEDNIDGIAVDIVREMFKRAGIK
YSLTLRFPWDRIYKLALEKPGYGVFVTARLAEREDKFKWVGPIGPDDWVLLAKGDSPITLGSLDEAKKYRIG
AYKGDAIAEFLGKNGFEADLALRDQENAQKLVKGQIDLWASGDPAGRYLAKQEGVTGLKTVLRFNSDQLYLA
LNRETPDEVVQKLQAALDGMRKEGFVEDILNSYL*
AnnotationID:3193GeneID:3185
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 12:12:14
Gene Name:
Confidence Code:3
GeneProduct:putative ABC-type amino acid transport protein, periplasmic component
Cell Localization:()
Synonyms:PA5138
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0834,smart00062,pfam00497,cd00134
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, 
periplasmic component/domain 
[Amino acid transport and metabolism / Signal transduction mechanisms]
CD-Length = 275 residues,  94.5% aligned
Score = 88.2 bits (217), Expect = 9e-19

smart00062, PBPb, Bacterial periplasmic substrate-binding proteins
CD-Length = 222 residues,  97.3% aligned
Score = 62.3 bits (151), Expect = 5e-11
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 15/226 (6%)

cd00134, PBPb, Bacterial periplasmic transport system
CD-Length = 218 residues,  99.1% aligned
Score = 56.6 bits (136), Expect = 3e-09
Identities = 46/225 (20%), Positives = 80/225 (35%), Gaps = 13/225 (5%)
pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.
CD-Length = 224 residues,  98.2% aligned
Score = 48.7 bits (116), Expect = 6e-07









   
Genomic Context:






   
Comment:


















    ReferenceID:6373




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23515




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34884




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3185_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3185
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5128
                           PA5138_tr
                           translation of PA5138
                           250
                           99.99
                           99.99
                           0
                           1285.0
     

     
     
143935
                           gb|AAG08523.1|AE004927_1
                           (AE004927) hypothetical protein PA5138 [Pseudomonas aeruginosa PAO1]
                           250
                           99.99
                           99.99
                           0
                           1285.0
     

     
     
143936
                           gb|AAO58759.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           269
                           60.59
                           72.49
                           19
                           860.0
     

     
     
5129
                           PA5137_tr
                           translation of PA5137
                           255
                           58.03
                           74.50
                           9
                           780.0
     

     
     
143937
                           gb|AAG08522.1|AE004926_12
                           (AE004926) hypothetical protein PA5137 [Pseudomonas aeruginosa PAO1]
                           255
                           58.03
                           74.50
                           9
                           780.0
     

     






      

          
GC ORFID: 46187How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5138Glimmer Score: 

          
Start: 5323457Stop: 5322705

          
Length: 753


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5138 translation of PA5138Homolog Bit Score 499.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6490 (ORF: BLASTX 335.0), t_PA5137 (ORF: BLASTX 304.0), t_PA5139 (ORF: BLASTX 275.0), t_PA5138 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAAGAAGCCTGCTCTTCGCGCTGCTCGCAACCCTGCTGTTGGTCGGCGGCGCGCGCGCCGAAACCGAT 
CCCGACTACAGCATGGTCCTGCTCACGGAGAACTTCCCGCCGTACAACATGGCGATCAACGGCAAGAACTTC 
GCCCAGGAAGACAACATCGACGGCATCGCCGTGGATATCGTCCGCGAGATGTTCAAGCGCGCCGGCATCAAG 
TACAGCCTGACCCTGCGTTTCCCCTGGGACCGCATCTACAAGCTGGCGCTGGAGAAGCCCGGCTACGGGGTG 
TTCGTCACCGCCCGCCTGGCCGAGCGCGAGGACAAGTTCAAGTGGGTCGGTCCGATCGGCCCGGACGACTGG 
GTGCTGCTGGCCAAGGGCGACAGCCCGATCACCCTGGGCAGCCTGGACGAGGCGAAGAAATACCGGATCGGC 
GCCTACAAGGGCGATGCCATCGCCGAGTTCCTCGGCAAGAACGGTTTCGAGGCCGACCTGGCGCTACGCGAC 
CAGGAAAACGCGCAGAAGCTGGTCAAGGGCCAGATCGACCTCTGGGCCAGCGGCGATCCTGCCGGGCGCTAC 
CTGGCCAAGCAGGAAGGCGTGACCGGCCTGAAGACGGTGCTGCGCTTCAACAGCGACCAGCTGTACCTGGCG 
CTCAACCGCGAGACTCCCGACGAAGTGGTGCAGAAGCTCCAGGCAGCCCTGGACGGCATGCGCAAGGAAGGC 
TTCGTCGAGGACATCCTCAACAGCTATCTCTGA