ViewGene
Locus Name:
GeneID:
Location:

GeneID:3184
TrivialName: PA14_66700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66700
PAO1 Ortholog Locus:PA5048
Sequence Length:768
Protein Length:255
Start: 5958429
Stop: 5957662
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08433.1|AE004918_3 (AE004918) probable nuclease [Pseudomonas aeruginosa PAO1]
Identities = 254/255 (99%), Positives = 254/255 (99%)
Sequence:
GTGGGCGCCTTTTTCATGTCCGTGGTTTCCGCCTTCGCCGGTGCGGCGGAGGCCTGCCGGCCTACCGGTGCC
TTGCAGAACGTCGAGGTGGCGCGGGTGGTGGACGGCGATACCGTGCGCCTGCGCGATGGCCGCAGCGTGCGG
CTGATCGGTATCAATGCGCCTGAACTGGCGCACAACGGCCGCACCACCGAGCCCTTCGCCGAAGCCGCGAAG
CAGCGGCTGCAGGCGCTGGTATCGGCCAGCGACGGGCGTCTCGCGCTGCAGCCGGGCCGCCAGGCCCGCGAT
CACTACGGGCGGACCCTGGCGCACCTGTTCGATGCCAGCGGCGCCAACCTCGAGGCGCGCCTGCTCGGCGAG
GGCCTGGGCTACCTGGTGGCGGTCGCGCCGAACACCGAGCTGACGGCCTGTCAGCAAACGGCGGAACGTGCC
GCGCGTTCGGCTAATCTGGGTGTATGGAAGCGTTCGCCGGTGCTTTCGCTCGATCGACTGGCGCAGAGCGGC
TTCGCCGTGGTCCGCGGGCGGGTGCTCGAGGTCGAACGCAACCGGGGCGGTATCTGGCTGGAGATGGACGGT
CCGCTGGTCCTGCGGATCGAGCCGAAGGTGCTCAAGGCGTTCGATGCGAAACGGGTGATGCAGATGGCGGGA
CGTTCGCTGGAAGTGCGTGGCTGGGTGGTCGATCGTTCCCGCCGTGGCGCTGTGCCGGCCGGCAAGGCGCGC
TGGCAGATGTCGGTGACCGATCCGGCGATGCTGGAATGGTTGCCATGA
Translation:
MGAFFMSVVSAFAGAAEACRPTGALQNVEVARVVDGDTVRLRDGRSVRLIGINAPELAHNGRTTEPFAEAAK
QRLQALVSASDGRLALQPGRQARDHYGRTLAHLFDASGANLEARLLGEGLGYLVAVAPNTELTACQQTAERA
ARSANLGVWKRSPVLSLDRLAQSGFAVVRGRVLEVERNRGGIWLEMDGPLVLRIEPKVLKAFDAKRVMQMAG
RSLEVRGWVVDRSRRGAVPAGKARWQMSVTDPAMLEWLP*
AnnotationID:3192GeneID:3184
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 18:06:52
Gene Name:
Confidence Code:3
GeneProduct:putative nuclease
Cell Localization:()
Synonyms:PA5048
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00565,COG1525,cd00175
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70651.1|AE016709_3 (AE016793) thermonuclease family protein [Pseudomonas putida
           KT2440]
          Length = 255

 Score =  279 bits (714), Expect = 1e-74
 Identities = 140/252 (55%), Positives = 183/252 (72%), Gaps = 1/252 (0%)

>gb|AAO58562.1| (AE016874) staphylococcal nuclease homologue [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 247

 Score =  271 bits (692), Expect = 3e-72
 Identities = 132/239 (55%), Positives = 173/239 (72%)






 
Structural Features:
pfam00565, SNase, Staphylococcal nuclease homologue.
CD-Length = 132 residues, 100.0% aligned
Score = 83.0 bits (205), Expect = 3e-17
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 10/137 (7%)

COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs 
[DNA replication, recombination, and repair]
CD-Length = 192 residues,  71.4% aligned
Score = 77.6 bits (190), Expect = 1e-15
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 12/143 (8%)

cd00175, SNc, Staphylococcal nuclease homologues.
CD-Length = 129 residues,  99.2% aligned
Score = 72.2 bits (177), Expect = 5e-14
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 13/132 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14755




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23513




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35004




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: (text/plain)







    
Data:3184_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3184
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5127
                           PA5048_tr
                           translation of PA5048
                           255
                           99.60
                           99.60
                           0
                           1284.0
     

     
     
143932
                           gb|AAG08433.1|AE004918_3
                           (AE004918) probable nuclease [Pseudomonas aeruginosa PAO1]
                           255
                           99.21
                           99.60
                           0
                           1281.0
     

     
     
143933
                           gb|AAN70651.1|AE016709_3
                           (AE016793) thermonuclease family protein [Pseudomonas putida KT2440]
                           256
                           54.29
                           71.87
                           2
                           710.0
     

     
     
143934
                           gb|AAO58562.1|
                           (AE016874) staphylococcal nuclease homologue [Pseudomonas syringae pv. tomato str. DC3000]
                           255
                           52.54
                           69.41
                           8
                           689.0
     

     






      

          
GC ORFID: 46186How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5048Glimmer Score: 

          
Start: 5222112Stop: 5221345

          
Length: 768


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5048 translation of PA5048Homolog Bit Score 499.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3286 (ORF: BLASTX 297.0), t_PA5048 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGGCGCCTTTTTCATGTCCGTGGTTTCCGCCTTCGCCGGTGCGGCGGAGGCCTGCCGGCCTACCGGTGCC 
TTGCAGAACGTCGAGGTGGCGCGGGTGGTGGACGGCGATACCGTGCGCCTGCGCGATGGCCGCAGCGTGCGG 
CTGATCGGTATCAATGCGCCTGAACTGGCGCACAACGGCCGCACCACCGAGCCCTTCGCCGAAGCCGCGAAG 
CAGCGGCTGCAGGCGCTGGTATCGGCCAGCGACGGGCGTCTCGCGCTGCAGCCGGGCCGCCAGGCCCGCGAT 
CACTACGGGCGGACCCTGGCGCACCTGTTCGATGCCAGCGGCGCCAACCTCGAGGCGCGCCTGCTCGGCGAG 
GGCCTGGGCTACCTGGTGGCGGTCGCGCCGAACACCGAGCTGACGGCCTGTCAGCAAACGGCGGAACGTGCC 
GCGCGTTCGGCTAATCTGGGTGTATGGAAGCGTTCGCCGGTGCTTTCGCTCGATCGACTGGCGCAGAGCGGC 
TTCGCCGTGGTCCGCGGGCGGGTGCTCGAGGTCGAACGCAACCGGGGCGGTATCTGGCTGGAGATGGACGGT 
CCGCTGGTCCTGCGGATCGAGCCGAAGGTGCTCAAGGCGTTCGATGCGAAACGGGTGATGCAGATGGCGGGA 
CGTTCGCTGGAAGTGCGTGGCTGGGTGGTCGATCGTTCCCGCCGTGGCGCTGTGCCGGCCGGCAAGGCGCGC 
TGGCAGATGTCGGTGACCGATCCGGCGATGCTGGAATGGTTGCCATGA