ViewGene

Locus Name:
GeneID:
Location:

GeneID:3183
TrivialName: PA14_13010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13010
PAO1 Ortholog Locus:PA3931
Sequence Length:780
Protein Length:259
Start: 1117461
Stop: 1116682
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07318.1|AE004811_1 (AE004811) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 259/259 (100%), Positives = 259/259 (100%)
Sequence:
ATGAAAAAACTGCTCCTGCTGACTGCCCTGGCCTCCGTCATCAGCGTTTCCGCCAGCGCCGCGGAAAAGCTC
ATCGTCGCCGCCACGCCGATCCCCCATGCGGAAATCCTTGAGCTGATCAAGCCGACCCTGGCGAAGGAAGGC
GTCGACCTGCAGATCAAGGTGTTCACCGACTACGTGCAGCCCAACGTGCAGGTCGCCGAGAAGCGCCTGGAC
GCCAACTACTTCCAGACCCTGCCGTACCTGGAGAACTTCAACAAAGGCAAGGGCACCAACCTGGTCACCGTG
GTCGGCGTACACGTCGAACCCTTCGGTGGCTATTCGAGGAAATACAAGTCGCTGGCCGAGCTGCCCGACGGC
GCCACCGTCGCCATCCCCAACGAAGGCAGCAACAGCGGGCGCGCCCTGCTGCTGTTGCAGAAGGCCGGCCTG
CTCAAGCTGAAGGACCCGAACAACGCCCTGGCCACGCCCAAGGACATCGCCGAGAACCCGAAGAACCTGAAG
TTCAAGGAACTCGAATCGGCCCTGTTGCCACGCGTGCTGGACCAGGTCGACCTGGACCTTATCAACACCAAC
TACGCGCTGGAGGCCAAGCTCAACCCGGCCAAGGACGCGCTGGTCCTGGAAGACCGCGACTCGCCCTATGTG
AACTACCTGGTGGCGCGTCCGGACAACAAGGACAGCGACGCCCTGAAGAAGCTTTCCGCCGCGCTGACCAGC
CCGGAAGTGAAAGCCTTCATCGAGAAGAAATATGCCGGCGCGGTGGTCCCGGCCTTCTGA
Translation:
MKKLLLLTALASVISVSASAAEKLIVAATPIPHAEILELIKPTLAKEGVDLQIKVFTDYVQPNVQVAEKRLD
ANYFQTLPYLENFNKGKGTNLVTVVGVHVEPFGGYSRKYKSLAELPDGATVAIPNEGSNSGRALLLLQKAGL
LKLKDPNNALATPKDIAENPKNLKFKELESALLPRVLDQVDLDLINTNYALEAKLNPAKDALVLEDRDSPYV
NYLVARPDNKDSDALKKLSAALTSPEVKAFIEKKYAGAVVPAF*
AnnotationID:3191GeneID:3183
AnnotatorUID: urbach
Modification Date/Time: 2004-03-26 23:11:05
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:6369
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23511
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3183

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5125 PA3931_tr translation of PA3931 259 99.99 99.99 0 1286.0
143832 gb|AAG07318.1|AE004811_1 (AE004811) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 259 99.99 99.99 0 1286.0
143833 gb|AAN70730.1|AE016716_9 (AE016793) lipoprotein, putative [Pseudomonas putida KT2440] 261 83.52 92.72 2 1105.0
143834 gb|AAO58642.1| (AE016875) lipoprotein, NLPA family [Pseudomonas syringae pv. tomato str. DC3000] 260 77.30 86.53 1 1028.0
143835 gb|AAG08890.1|AE004963_3 (AE004963) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1] 260 70.00 81.92 1 928.0
GC ORFID: 46185How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3931Glimmer Score:
Start: 3836477Stop: 3837256
Length: 780
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3931 translation of PA3931Homolog Bit Score 499.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3238 (ORF: BLASTX 398.0), t_PA5505 (ORF: BLASTX 361.0), psyr_15may02_Scaffold2_revised_gene3200 (ORF: BLASTX 357.0), t_PA3931 (ORF: GLIMMER)
GC ORF Sequence
ATGAAAAAACTGCTCCTGCTGACTGCCCTGGCCTCCGTCATCAGCGTTTCCGCCAGCGCCGCGGAAAAGCTC
ATCGTCGCCGCCACGCCGATCCCCCATGCGGAAATCCTTGAGCTGATCAAGCCGACCCTGGCGAAGGAAGGC
GTCGACCTGCAGATCAAGGTGTTCACCGACTACGTGCAGCCCAACGTGCAGGTCGCCGAGAAGCGCCTGGAC
GCCAACTACTTCCAGACCCTGCCGTACCTGGAGAACTTCAACAAAGGCAAGGGCACCAACCTGGTCACCGTG
GTCGGCGTACACGTCGAACCCTTCGGTGGCTATTCGAGGAAATACAAGTCGCTGGCCGAGCTGCCCGACGGC
GCCACCGTCGCCATCCCCAACGAAGGCAGCAACAGCGGGCGCGCCCTGCTGCTGTTGCAGAAGGCCGGCCTG
CTCAAGCTGAAGGACCCGAACAACGCCCTGGCCACGCCCAAGGACATCGCCGAGAACCCGAAGAACCTGAAG
TTCAAGGAACTCGAATCGGCCCTGTTGCCACGCGTGCTGGACCAGGTCGACCTGGACCTTATCAACACCAAC
TACGCGCTGGAGGCCAAGCTCAACCCGGCCAAGGACGCGCTGGTCCTGGAAGACCGCGACTCGCCCTATGTG
AACTACCTGGTGGCGCGTCCGGACAACAAGGACAGCGACGCCCTGAAGAAGCTTTCCGCCGCGCTGACCAGC
CCGGAAGTGAAAGCCTTCATCGAGAAGAAATATGCCGGCGCGGTGGTCCCGGCCTTCTGA