ViewGene

Locus Name:
GeneID:
Location:

GeneID:3182
TrivialName: PA14_19800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19800
PAO1 Ortholog Locus:PA3423
Sequence Length:744
Protein Length:247
Start: 1706333
Stop: 1705590
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06811.1|AE004763_6 (AE004763) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 247/247 (100%), Positives = 247/247 (100%)
Sequence:
ATGCGCTACCACCTCAGTTGGAAGCACCGCGACATCGACGCGGTGATGGCGCTCTATCATCCCGAGGTCGAA
TACAACGACTTCTTCCAGAACCGCCGGATGCGCCTGGCCGATCTTCGCGAGTACGTCGAGGCGACCATGCCC
AAGGGCCCCGACGAGTCGCTGGAGCACACCGACCGTATCCGCTTCGACGGCGATACCGCCTTCATCCAGTAC
CGCCTGCGGGTGACCCTCAGCGGCCGCCTGGCTTCGTTCCGCGCCAGCGAGGCGATCACCGTGCGCGACGGC
CTGATCTGGCGCATCAACGAATACGCCTCGCTGGTCCACGAAAGCGGCGGCGGAGCCCAGGCCGGCGGCGAC
GGCCGGCCGCCGGCCAGCCGCCTGGGGCTTTCGGCCAAGCAGCTGAGCCTGCTGGCGCGCGACCTGGAGCAC
TACTTCCAGCAGGCCCAGCCCTATCTCGATCCGGACCTGGACCTGACCCAGGTGGCCAACGCCACCGGTTAT
ACGCGCAACCAGATTTCCTACCTGCTCAACCAGGTGCTCGGCCTGAGCTTCTACCAGTACGTCAACCAGACC
CGCCTGCAACACCTGCTCGGCCAGCTTTCCGGCGAGCTGCCCGGACGGGTCGACGAACTGGCCTTCGCCGCC
GGCTTCAATTCGCTGTCGGCCTTCTACCGCTGCTTCCGCCAGCACACCGGCCAGTCTCCGCGCGAATACCTG
AAGCGCCTGTCGTCGCGCCGCTGA
Translation:
MRYHLSWKHRDIDAVMALYHPEVEYNDFFQNRRMRLADLREYVEATMPKGPDESLEHTDRIRFDGDTAFIQY
RLRVTLSGRLASFRASEAITVRDGLIWRINEYASLVHESGGGAQAGGDGRPPASRLGLSAKQLSLLARDLEH
YFQQAQPYLDPDLDLTQVANATGYTRNQISYLLNQVLGLSFYQYVNQTRLQHLLGQLSGELPGRVDELAFAA
GFNSLSAFYRCFRQHTGQSPREYLKRLSSRR*
AnnotationID:3190GeneID:3182
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 17:05:45
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA3423
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66501.1|AE016279_4 (AE016777) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 274

 Score =  320 bits (821), Expect = 4e-87
 Identities = 154/247 (62%), Positives = 197/247 (79%), Gaps = 2/247 (0%)

Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 66.0 bits (161), Expect = 4e-12
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Genomic Context:
Comment:
ReferenceID:6367
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23509
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32143
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3182_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3182

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5124 PA3423_tr translation of PA3423 247 99.99 99.99 0 1285.0
143830 gb|AAG06811.1|AE004763_6 (AE004763) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 247 99.99 99.99 0 1285.0
143831 gb|AAN66501.1|AE016279_4 (AE016777) transcriptional regulator, AraC family [Pseudomonas putida KT2440] 275 56.00 71.63 29 824.0
GC ORFID: 46184How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3423Glimmer Score:
Start: 3247599Stop: 3248342
Length: 744
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3423 translation of PA3423Homolog Bit Score 499.0
Other Homologs: t_PA3423 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCTACCACCTCAGTTGGAAGCACCGCGACATCGACGCGGTGATGGCGCTCTATCATCCCGAGGTCGAA
TACAACGACTTCTTCCAGAACCGCCGGATGCGCCTGGCCGATCTTCGCGAGTACGTCGAGGCGACCATGCCC
AAGGGCCCCGACGAGTCGCTGGAGCACACCGACCGTATCCGCTTCGACGGCGATACCGCCTTCATCCAGTAC
CGCCTGCGGGTGACCCTCAGCGGCCGCCTGGCTTCGTTCCGCGCCAGCGAGGCGATCACCGTGCGCGACGGC
CTGATCTGGCGCATCAACGAATACGCCTCGCTGGTCCACGAAAGCGGCGGCGGAGCCCAGGCCGGCGGCGAC
GGCCGGCCGCCGGCCAGCCGCCTGGGGCTTTCGGCCAAGCAGCTGAGCCTGCTGGCGCGCGACCTGGAGCAC
TACTTCCAGCAGGCCCAGCCCTATCTCGATCCGGACCTGGACCTGACCCAGGTGGCCAACGCCACCGGTTAT
ACGCGCAACCAGATTTCCTACCTGCTCAACCAGGTGCTCGGCCTGAGCTTCTACCAGTACGTCAACCAGACC
CGCCTGCAACACCTGCTCGGCCAGCTTTCCGGCGAGCTGCCCGGACGGGTCGACGAACTGGCCTTCGCCGCC
GGCTTCAATTCGCTGTCGGCCTTCTACCGCTGCTTCCGCCAGCACACCGGCCAGTCTCCGCGCGAATACCTG
AAGCGCCTGTCGTCGCGCCGCTGA