ViewGene
Locus Name:
GeneID:
Location:

GeneID:3181
TrivialName: PA14_22580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22580
PAO1 Ortholog Locus:PA3220
Sequence Length:765
Protein Length:254
Start: 1964870
Stop: 1964106
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06608.1|AE004745_5 (AE004745) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 252/254 (99%), Positives = 254/254 (100%)
Sequence:
ATGGGTTCGATCCTTTCCCTGCGCCACTACAGCCACGACCAGATCGTCCACAGCCATGACCATGCCCAATTG
GTCCTGGGCCTCAGCGGCTGCCTCGAGTTCGAGGTCGAGGGGCGCGGCAGCCGCGTGTTGCGGCAGACCTTC
GCGGTGGTGCCGGCGCAAGCCCGGCATGCCTGCTCGAGTCCCGCCGGCAGCCGCTGCCTGGTCCTCGACCTG
CCCTGCGACGGCAGCCTGCTGCTGGGCCTGGGCGAACACGCCGAAGCCGGCAGGCGGCTGTTCGAGCGACCG
CAGGCGCTGTCGCTGACACCCGCCCAGGGCCAACTGGTGAACTGGCTGGCCAGCGGCCCGATCAACGACCCG
GTGATCGCCCACCAGGGCGCCGGCCTGCTCCTCGCCAGCCTGGCCAGCGAGCGCCAGCCGCCGCGCCAGCAG
CCCCGCCTGCCACTGGCCAGCCTGGACGCCTACCTCGACCGCCATGCCGCCCATCCGCTACAGGTAGCCGAC
CTGGCGCGGCTGGCCGGTCTTTCGGTGGCGCGCTTCCACAGCCTGTTCCTCGCCGAGACCGGACAGACGCCC
ATGGACTACGCGCGCAGCCGACGCCTGCACCAGGCCCACGAACTGTTGTTGGAGAGCAGCCTGGCGGTGGGC
GAGATCGCCGCCCGGGTCGGCTACGCCTCGCAGAGCGCCTTCACCGCAGCGCTGGTCCGCGAGTTCGGCGTC
ACCCCGCGACAACTGCGTCGCGAGTCCCGCGACAAAACCGGCTAG
Translation:
MGSILSLRHYSHDQIVHSHDHAQLVLGLSGCLEFEVEGRGSRVLRQTFAVVPAQARHACSSPAGSRCLVLDL
PCDGSLLLGLGEHAEAGRRLFERPQALSLTPAQGQLVNWLASGPINDPVIAHQGAGLLLASLASERQPPRQQ
PRLPLASLDAYLDRHAAHPLQVADLARLAGLSVARFHSLFLAETGQTPMDYARSRRLHQAHELLLESSLAVG
EIAARVGYASQSAFTAALVREFGVTPRQLRRESRDKTG*
AnnotationID:3189GeneID:3181
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 10:10:31
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA3220
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342,COG2207
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70085.1|AE016648_3 (AE016790) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 255

 Score =  285 bits (729), Expect = 2e-76
 Identities = 151/253 (59%), Positives = 188/253 (74%), Gaps = 5/253 (1%)








 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 89.5 bits (222), Expect = 3e-19
Identities = 41/84 (48%), Positives = 52/84 (61%)

COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
CD-Length = 127 residues,  98.4% aligned
Score = 91.9 bits (227), Expect = 7e-20
Identities = 46/125 (36%), Positives = 65/125 (52%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6365




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23507




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32325




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3181_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3181
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5123
                           PA3220_tr
                           translation of PA3220
                           254
                           99.21
                           99.99
                           0
                           1284.0
     

     
     
143828
                           gb|AAG06608.1|AE004745_5
                           (AE004745) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           254
                           99.21
                           99.99
                           0
                           1284.0
     

     
     
143829
                           gb|AAN70085.1|AE016648_3
                           (AE016790) transcriptional regulator, AraC family [Pseudomonas putida KT2440]
                           259
                           58.30
                           72.58
                           9
                           733.0
     

     






      

          
GC ORFID: 46183How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3220Glimmer Score: 

          
Start: 2989061Stop: 2989825

          
Length: 765


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3220 translation of PA3220Homolog Bit Score 499.0

          
Other Homologs:  t_PA3220 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGTTCGATCCTTTCCCTGCGCCACTACAGCCACGACCAGATCGTCCACAGCCATGACCATGCCCAATTG 
GTCCTGGGCCTCAGCGGCTGCCTCGAGTTCGAGGTCGAGGGGCGCGGCAGCCGCGTGTTGCGGCAGACCTTC 
GCGGTGGTGCCGGCGCAAGCCCGGCATGCCTGCTCGAGTCCCGCCGGCAGCCGCTGCCTGGTCCTCGACCTG 
CCCTGCGACGGCAGCCTGCTGCTGGGCCTGGGCGAACACGCCGAAGCCGGCAGGCGGCTGTTCGAGCGACCG 
CAGGCGCTGTCGCTGACACCCGCCCAGGGCCAACTGGTGAACTGGCTGGCCAGCGGCCCGATCAACGACCCG 
GTGATCGCCCACCAGGGCGCCGGCCTGCTCCTCGCCAGCCTGGCCAGCGAGCGCCAGCCGCCGCGCCAGCAG 
CCCCGCCTGCCACTGGCCAGCCTGGACGCCTACCTCGACCGCCATGCCGCCCATCCGCTACAGGTAGCCGAC 
CTGGCGCGGCTGGCCGGTCTTTCGGTGGCGCGCTTCCACAGCCTGTTCCTCGCCGAGACCGGACAGACGCCC 
ATGGACTACGCGCGCAGCCGACGCCTGCACCAGGCCCACGAACTGTTGTTGGAGAGCAGCCTGGCGGTGGGC 
GAGATCGCCGCCCGGGTCGGCTACGCCTCGCAGAGCGCCTTCACCGCAGCGCTGGTCCGCGAGTTCGGCGTC 
ACCCCGCGACAACTGCGTCGCGAGTCCCGCGACAAAACCGGCTAG