ViewGene

Locus Name:
GeneID:
Location:

GeneID:318
TrivialName: PA14_65810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65810
PAO1 Ortholog Locus:PA4978
Sequence Length:2091
Protein Length:696
Start: 5862782
Stop: 5860692
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08363.1|AE004910_10 (AE004910) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 695/696 (99%), Positives = 695/696 (99%)
Sequence:
ATGAATCGTGAAAACCTCAAGCGCCTGCTGGCACCCAGGCATCTCGCCTTCATTGGCGGCCGTGGCATGGCG
CGTGCCCTGAAACGCTGTGCCGAAGGCGGTTTCGCCGGCCAGTTGTGGCTGGTCAATCCGCAGCACGCCGAA
CTCGAAGGCGTACCCTGCGTGGCCAGCGTCGCCGACCTGCCGTGCGGCCCGGACGCGGCGTTCGTCGCCACC
AACCGCGAACTGACCCTCGACGCGGTCGCCGCGCTCGCCGCCAAAGGCGCCGGCGGGGCGATCTGCTATGCC
TCCGGCTTCGCCGAAACCGGCGAACAGGGCCTGGCCGTGCAACGCCGGCTGCTGGCCGCCGCCGGCGAAATG
GCGCTGCTTGGCCCGAACTGCTACGGCTTGCTCGACTACCTGCACGGCGCCGCGCTATGGCCGGTGGCACAT
GGCGGTCGGCAGGTGGAGCGGGGCGTCGCGGTGCTGACGCAGAGCGGCAACTTCGCCTACAACCTGTCGATG
AGCGACCGTTCGCTGCCGGTGGCCTATATGGCATCGGTGGGCAACCAGGCGCAGCTGGGCATCGCCGAGCTG
ATGGACGTGCTGCTCGACGAGCCGCGGGTGACTGCCATCGGCCTGCATCTGGAAGGTCTGAAGAACGTCCCG
GGGTTCGCCCGCGCGGCCTACAAGGCGTTGCAGAAAGGCGTGCCGGTGATCGCCCTGAAGACCGGAGTGTCG
AAGATCGGTGCGGCCCTCGCGCTCAGCCACACCAGTTCCCTGGCCGGTTCCGACGCGCTCTACGACAGCCTG
TTCGAGCGCCTCGGGGTAATCCGTGTGAGCGGCCCGGTGAGCTTCGTCGAAACCCTCAAGGCCGCCGCCTGC
GGCCACCTGCCTGGCGGGCCGAGCCTGGTCGCGCTGGCCTGTTCCGGCGGCGACGCCGGGTTGATCGCTGAC
TACGCCGAGCGCAACGGCCTGGGGTTGCCGTCTTTCGACGCCGGACAGCGCGACGAACTGGCCGGGGTGTTG
CCCGACTACGCCAACATCGCCAACCCGCTGGACTTCACCACCGCCATCTGGGGCGATGCCGCGGCCCTGGAG
GAAATGCTCGACAGCGCTTTGCGCAGCCCTGCCGACGCCGCCCTGCTGGTGCTCGACTATCCGGGCGAGGAA
ACCGGCGAGCGGCCGCAGTGCGACCTGCTTCTGCAACGCTACTGCGCCGCGCTGAAGCGCCACGGCAAAGTC
GGCTTCATCGCCTCGGCGTTCCCGGAACTGCTGCCGGCCCGGGCCCGCGAGCTGTTGCACGGCGAGGGCGTC
GCCGCGCTGCAAGGCGTCGAGGATGGTCTCGCCGCCTGGGGACGGATCGCCCGCTACCGCCAGCGCCGCGCG
GCGCTGCTGGAGCGCGGTGAGGCGGCGTTGGTGCCGATCTGCCCAGGGCCGCTGGCGGGCGACGGCTACCTG
CTCGACGAGTGGCAATCCAAGCAGGCGCTGAAACCCTTCGGCCTGCCACTGCCCCaGGGGGTGCTGAGCACC
CCcgGCCAGGCCCGCGAAGCGGCCCTCGACCTCGGCTTCCCGCTGGTGCTCAAGGCGGTCAGCGCCGCGCTG
CCGCACAAGACCGAGGCCGGCGGCGTGGCGCTCGGCCTGCGCAACGAGGCGGCGCTGGAGGCGGCATTGTTC
GACATGCGCGAAAGCCTGGCCCGGCACGCGCCGCAACTGGTCTTCGAGCGTGTGTTGCTGGAGCGCATGGCA
GGCGCGCCGCTGGCCGAGCTGATCGTCGGGGTCAAGCGCGAGGAGGGCTTCGGCCTGGCATTGGTGATCGGT
GCCGGCGGGATACTCGTGGAGCTGCTGCGCGACAGTCGCAGCCTGCTCCTGCCGACCACCGACGCGGCGATC
CGCGATGCCCTGCTGAGCCTGCGCAGCGCGCCGTTGCTCAGCGGCTTCCGCGGTCGCCCGGCGGTATCCATG
GAGGCCCTGGTGGCGGCGATCCGCGCGGTCGCCGAATTCGCCTGCGAACATGCCGAGCGCTTGCTGGAGCTG
GACGTCAACCCATTGCTGGCGGATGCCGAGGGAGCGCTGGCGGTGGATGCGTTGATCCGGCTGGCCAATGGC
TGA
Translation:
MNRENLKRLLAPRHLAFIGGRGMARALKRCAEGGFAGQLWLVNPQHAELEGVPCVASVADLPCGPDAAFVAT
NRELTLDAVAALAAKGAGGAICYASGFAETGEQGLAVQRRLLAAAGEMALLGPNCYGLLDYLHGAALWPVAH
GGRQVERGVAVLTQSGNFAYNLSMSDRSLPVAYMASVGNQAQLGIAELMDVLLDEPRVTAIGLHLEGLKNVP
GFARAAYKALQKGVPVIALKTGVSKIGAALALSHTSSLAGSDALYDSLFERLGVIRVSGPVSFVETLKAAAC
GHLPGGPSLVALACSGGDAGLIADYAERNGLGLPSFDAGQRDELAGVLPDYANIANPLDFTTAIWGDAAALE
EMLDSALRSPADAALLVLDYPGEETGERPQCDLLLQRYCAALKRHGKVGFIASAFPELLPARARELLHGEGV
AALQGVEDGLAAWGRIARYRQRRAALLERGEAALVPICPGPLAGDGYLLDEWQSKQALKPFGLPLPQGVLST
PGQAREAALDLGFPLVLKAVSAALPHKTEAGGVALGLRNEAALEAALFDMRESLARHAPQLVFERVLLERMA
GAPLAELIVGVKREEGFGLALVIGAGGILVELLRDSRSLLLPTTDAAIRDALLSLRSAPLLSGFRGRPAVSM
EALVAAIRAVAEFACEHAERLLELDVNPLLADAEGALAVDALIRLANG*
AnnotationID:328GeneID:318
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 07:07:44
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA synthetase
Cell Localization:()
Synonyms:PA4978 Zoom In
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1042
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69320.1|AE016569_4 (AE016788) acyl-CoA synthetase, putative [Pseudomonas putida
           KT2440]
          Length = 705

 Score = 1038 bits (2683), Expect = 0.0
 Identities = 525/691 (75%), Positives = 591/691 (85%)

Structural Features:
COG1042, COG1042, Acyl-CoA synthetase (NDP forming) 
[Energy production and conversion]
CD-Length = 598 residues, 100.0% aligned
Score =  385 bits (989), Expect = 1e-107
Identities = 208/632 (32%), Positives = 309/632 (48%), Gaps = 45/632 (7%)
Genomic Context:
Comment:
ReferenceID:639
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17781
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35074
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:318_cdd.html
URL:
Homologs By Global Alignment
Gene ID:318

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
527 PA4978_tr translation of PA4978 696 99.85 99.85 0 3498.0
26062 gb|AAG08363.1|AE004910_10 (AE004910) hypothetical protein PA4978 [Pseudomonas aeruginosa PAO1] 696 99.85 99.85 0 3498.0
26063 gb|AAN69320.1|AE016569_4 (AE016788) acyl-CoA synthetase, putative [Pseudomonas putida KT2440] 705 74.46 83.82 9 2679.0
26064 emb|CAE32072.1| (BX640441) Putative acetyl-CoA synthetase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 723 12.86 17.70 509 314.0
26065 emb|CAE37478.1| (BX640429) Putative acetyl-CoA synthetase [Bordetella parapertussis] 723 12.86 17.70 509 313.0
GC ORFID: 43320How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4978Glimmer Score:
Start: 5126465Stop: 5124375
Length: 2091
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4978 translation of PA4978Homolog Bit Score 1352.0
Other Homologs: t_PA4978 (ORF: GLIMMER)
GC ORF Sequence
ATGAATCGTGAAAACCTCAAGCGCCTGCTGGCACCCAGGCATCTCGCCTTCATTGGCGGCCGTGGCATGGCG
CGTGCCCTGAAACGCTGTGCCGAAGGCGGTTTCGCCGGCCAGTTGTGGCTGGTCAATCCGCAGCACGCCGAA
CTCGAAGGCGTACCCTGCGTGGCCAGCGTCGCCGACCTGCCGTGCGGCCCGGACGCGGCGTTCGTCGCCACC
AACCGCGAACTGACCCTCGACGCGGTCGCCGCGCTCGCCGCCAAAGGCGCCGGCGGGGCGATCTGCTATGCC
TCCGGCTTCGCCGAAACCGGCGAACAGGGCCTGGCCGTGCAACGCCGGCTGCTGGCCGCCGCCGGCGAAATG
GCGCTGCTTGGCCCGAACTGCTACGGCTTGCTCGACTACCTGCACGGCGCCGCGCTATGGCCGGTGGCACAT
GGCGGTCGGCAGGTGGAGCGGGGCGTCGCGGTGCTGACGCAGAGCGGCAACTTCGCCTACAACCTGTCGATG
AGCGACCGTTCGCTGCCGGTGGCCTATATGGCATCGGTGGGCAACCAGGCGCAGCTGGGCATCGCCGAGCTG
ATGGACGTGCTGCTCGACGAGCCGCGGGTGACTGCCATCGGCCTGCATCTGGAAGGTCTGAAGAACGTCCCG
GGGTTCGCCCGCGCGGCCTACAAGGCGTTGCAGAAAGGCGTGCCGGTGATCGCCCTGAAGACCGGAGTGTCG
AAGATCGGTGCGGCCCTCGCGCTCAGCCACACCAGTTCCCTGGCCGGTTCCGACGCGCTCTACGACAGCCTG
TTCGAGCGCCTCGGGGTAATCCGTGTGAGCGGCCCGGTGAGCTTCGTCGAAACCCTCAAGGCCGCCGCCTGC
GGCCACCTGCCTGGCGGGCCGAGCCTGGTCGCGCTGGCCTGTTCCGGCGGCGACGCCGGGTTGATCGCTGAC
TACGCCGAGCGCAACGGCCTGGGGTTGCCGTCTTTCGACGCCGGACAGCGCGACGAACTGGCCGGGGTGTTG
CCCGACTACGCCAACATCGCCAACCCGCTGGACTTCACCACCGCCATCTGGGGCGATGCCGCGGCCCTGGAG
GAAATGCTCGACAGCGCTTTGCGCAGCCCTGCCGACGCCGCCCTGCTGGTGCTCGACTATCCGGGCGAGGAA
ACCGGCGAGCGGCCGCAGTGCGACCTGCTTCTGCAACGCTACTGCGCCGCGCTGAAGCGCCACGGCAAAGTC
GGCTTCATCGCCTCGGCGTTCCCGGAACTGCTGCCGGCCCGGGCCCGCGAGCTGTTGCACGGCGAGGGCGTC
GCCGCGCTGCAAGGCGTCGAGGATGGTCTCGCCGCCTGGGGACGGATCGCCCGCTACCGCCAGCGCCGCGCG
GCGCTGCTGGAGCGCGGTGAGGCGGCGTTGGTGCCGATCTGCCCAGGGCCGCTGGCGGGCGACGGCTACCTG
CTCGACGAGTGGCAATCCAAGCAGGCGCTGAAACCCTTCGGCCTGCCACTGCCCCaGGGGGTGCTGAGCACC
CCcgGCCAGGCCCGCGAAGCGGCCCTCGACCTCGGCTTCCCGCTGGTGCTCAAGGCGGTCAGCGCCGCGCTG
CCGCACAAGACCGAGGCCGGCGGCGTGGCGCTCGGCCTGCGCAACGAGGCGGCGCTGGAGGCGGCATTGTTC
GACATGCGCGAAAGCCTGGCCCGGCACGCGCCGCAACTGGTCTTCGAGCGTGTGTTGCTGGAGCGCATGGCA
GGCGCGCCGCTGGCCGAGCTGATCGTCGGGGTCAAGCGCGAGGAGGGCTTCGGCCTGGCATTGGTGATCGGT
GCCGGCGGGATACTCGTGGAGCTGCTGCGCGACAGTCGCAGCCTGCTCCTGCCGACCACCGACGCGGCGATC
CGCGATGCCCTGCTGAGCCTGCGCAGCGCGCCGTTGCTCAGCGGCTTCCGCGGTCGCCCGGCGGTATCCATG
GAGGCCCTGGTGGCGGCGATCCGCGCGGTCGCCGAATTCGCCTGCGAACATGCCGAGCGCTTGCTGGAGCTG
GACGTCAACCCATTGCTGGCGGATGCCGAGGGAGCGCTGGCGGTGGATGCGTTGATCCGGCTGGCCAATGGC
TGA