ViewGene

Locus Name:
GeneID:
Location:

GeneID:3177
TrivialName: PA14_44780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44780
PAO1 Ortholog Locus:PA1520
Sequence Length:780
Protein Length:259
Start: 3992408
Stop: 3991629
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04909.1|AE004580_9 (AE004580) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 259/259 (100%), Positives = 259/259 (100%)
Sequence:
ATGACCGATCAGTTGCAACACATCAGGAAGCCGCCGCGCACCGGCAAGGCTGCCCGCAGCGGTACCCAGGAC
GAGATCGTCTACGCCCACATCTTCGACGCCATCCTCGAACAACGCCTGGCCCCCGGCACTAAGCTGAGCGAG
GAAGCGCTCGGCGAGATATTCGGCGTCAGCCGCACCATCATTCGCCGCGCCCTCTCGCGCCTGGCCCACGAG
CAGGTGGTGCTGTTACGGCCGAACCGCGGCGCGGTGGTCGCCAGCCCGAGCATCGACGAGGCCCGGCAGATC
CTTTTCGCCCGCCGCACCGTCGAGCGCGCCATCACCGAACTGGCCACCGACAACGCCACCGCCGAGCGCCTG
GCCGAGTTGCGCGAGATGGTGGTGCAGGAACAATCCAGCTTCGCCCGTGGCGACCGGGGCGCCGGCATCCGC
CTGTCCGGCGAGTTCCACCTGAAGCTCGCCGAGATGGCGCGCAACGCTCCTCTGGTGAGTTTCCAGCGCAGC
CTGGTGTCGCAGACCTCGCTGATCATCGCCCAGTACGAAAGCGGCGGTCGCTCGCACTGCTCGTTCGACGAG
CACAACGAGATCCTCGACGCCATCGAGAAGGGCGACAAGGAGCGCGCGGTGACCCTGATGATGCACCACATG
GAGCATATCGACAGCAAGCTCAACCTGGAGAGCGACAACGCTTCCGGCGACCTGCACGCGGTGTTCTCGCAC
CTCCTCGGCGGCAAGAAGAAGCCACGCCGGGCCAAGGCCGACAGCGACTCGGCGGCCTGA
Translation:
MTDQLQHIRKPPRTGKAARSGTQDEIVYAHIFDAILEQRLAPGTKLSEEALGEIFGVSRTIIRRALSRLAHE
QVVLLRPNRGAVVASPSIDEARQILFARRTVERAITELATDNATAERLAELREMVVQEQSSFARGDRGAGIR
LSGEFHLKLAEMARNAPLVSFQRSLVSQTSLIIAQYESGGRSHCSFDEHNEILDAIEKGDKERAVTLMMHHM
EHIDSKLNLESDNASGDLHAVFSHLLGGKKKPRRAKADSDSAA*
AnnotationID:3185GeneID:3177
AnnotatorUID: diggins
Modification Date/Time: 2006-02-06 22:10:21
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1520
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG180, COG2186
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69863.1|AE016625_6 (AE016790) transcriptional regulator, GntR family [Pseudomonas
           putida KT2440]
          Length = 251

 Score =  380 bits (977), Expect = e-105
 Identities = 195/249 (78%), Positives = 222/249 (89%), Gaps = 3/249 (1%)

>gb|AAO57133.1| (AE016869) transcriptional regulator, GntR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 249

 Score =  369 bits (946), Expect = e-101
 Identities = 188/249 (75%), Positives = 214/249 (85%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:6357
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17015
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI - Conserved Domain Search.
Reference Type:Blast (text/plain)
Data:PA1520_CDS.cgi
URL:
ReferenceID:23499
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3177

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5110 PA1520_tr translation of PA1520 259 99.99 99.99 0 1286.0
143283 gb|AAG04909.1|AE004580_9 (AE004580) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 259 99.99 99.99 0 1286.0
143284 gb|AAN69863.1|AE016625_6 (AE016790) transcriptional regulator, GntR family [Pseudomonas putida KT2440] 260 75.38 85.76 10 974.0
143285 gb|AAO57133.1| (AE016869) transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato str. DC3000] 259 72.97 83.39 10 947.0
143286 gb|AAN67866.1|AE016418_6 (AE016782) transcriptional regulator, GntR family [Pseudomonas putida KT2440] 259 41.69 57.52 37 521.0
GC ORFID: 46179How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1520Glimmer Score:
Start: 961501Stop: 962280
Length: 780
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1520 translation of PA1520Homolog Bit Score 499.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene826 (ORF: BLASTX 369.0), t_PA1520 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGATCAGTTGCAACACATCAGGAAGCCGCCGCGCACCGGCAAGGCTGCCCGCAGCGGTACCCAGGAC
GAGATCGTCTACGCCCACATCTTCGACGCCATCCTCGAACAACGCCTGGCCCCCGGCACTAAGCTGAGCGAG
GAAGCGCTCGGCGAGATATTCGGCGTCAGCCGCACCATCATTCGCCGCGCCCTCTCGCGCCTGGCCCACGAG
CAGGTGGTGCTGTTACGGCCGAACCGCGGCGCGGTGGTCGCCAGCCCGAGCATCGACGAGGCCCGGCAGATC
CTTTTCGCCCGCCGCACCGTCGAGCGCGCCATCACCGAACTGGCCACCGACAACGCCACCGCCGAGCGCCTG
GCCGAGTTGCGCGAGATGGTGGTGCAGGAACAATCCAGCTTCGCCCGTGGCGACCGGGGCGCCGGCATCCGC
CTGTCCGGCGAGTTCCACCTGAAGCTCGCCGAGATGGCGCGCAACGCTCCTCTGGTGAGTTTCCAGCGCAGC
CTGGTGTCGCAGACCTCGCTGATCATCGCCCAGTACGAAAGCGGCGGTCGCTCGCACTGCTCGTTCGACGAG
CACAACGAGATCCTCGACGCCATCGAGAAGGGCGACAAGGAGCGCGCGGTGACCCTGATGATGCACCACATG
GAGCATATCGACAGCAAGCTCAACCTGGAGAGCGACAACGCTTCCGGCGACCTGCACGCGGTGTTCTCGCAC
CTCCTCGGCGGCAAGAAGAAGCCACGCCGGGCCAAGGCCGACAGCGACTCGGCGGCCTGA