ViewGene
Locus Name:
GeneID:
Location:

GeneID:3176
TrivialName: PA14_06420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06420
PAO1 Ortholog Locus:PA0492
Sequence Length:759
Protein Length:252
Start: 564699
Stop: 565457
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03881.1|AE004486_10 (AE004486) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 250/252 (99%), Positives = 250/252 (99%)
Sequence:
ATGACTGAAGTCGACTTCAATTCCGACATGGGCGAAGGCTTCGGCCCATGGACCATCGGCGATGGCGTGGAT
GCCGCGATCATGCCGCTGATCAGCAGCGCCAACATCGCCACCGGTTTCCATGCCGGCGACCCGAGCAGCATG
CGCCGCACCGTGGAGATGGCCGCCGAGCATGGCGTGGCCATCGGCGCCCATCCGGGCTTCCGCGACCTGGTC
GGCTTCGGTCGCCGGCACATCGCCGCGCCGGCCATCGAGCTGGTCAACGACATGCTCTACCAGCTTGGCGCC
CTGCGCGAATTCGCCCGGCTGCAGGGCCTGTCGCTGCAACACGTCAAGCCCCACGGCGCGCTCTACATGCAC
CTGGCGCGCGACGAGGCCGCCGCGCGCCTGTTCGTCGAGACCCTGCAACGCCTGGAACCGGAACTGCTGCTC
TATTGCATGCCCGGTTCGGCCACCTGGCGCATCGGTCGGGAACTGGGCCAGCCGCTGGTGCGCGAGTTCTAC
GCCGACCGCGACTACGACCGTAGCGGCTCCATCGTCTTCACCCGGCGGGTCGCCGCCCTCGATCCGCAACAG
GTCGCCGACAAGGTCCTGCGCGCCTGCCGCGAGGGCAAGGTGCGCACCGTCGAGGGCGAGGACCTCGACATC
GCCTTCGACTCGGTGTGCATCCACAGCGACACCCCCGGCGCCCTGGAGCTGGTCGCCAGCACCCGCGCGCGC
CTGGAAGGCGCCGGCATCCGCATCAAGGCGCCGCGTTGA
Translation:
MTEVDFNSDMGEGFGPWTIGDGVDAAIMPLISSANIATGFHAGDPSSMRRTVEMAAEHGVAIGAHPGFRDLV
GFGRRHIAAPAIELVNDMLYQLGALREFARLQGLSLQHVKPHGALYMHLARDEAAARLFVETLQRLEPELLL
YCMPGSATWRIGRELGQPLVREFYADRDYDRSGSIVFTRRVAALDPQQVADKVLRACREGKVRTVEGEDLDI
AFDSVCIHSDTPGALELVASTRARLEGAGIRIKAPR*
AnnotationID:3184GeneID:3176
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 17:05:55
Gene Name:
Confidence Code:3
GeneProduct:putative homologue of lactam utilization protein B
Cell Localization:()
Synonyms:PA0492
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1540,pfam03746
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56429.1| (AE016866) LamB/YcsF family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 251

 Score =  383 bits (984), Expect = e-106
 Identities = 186/250 (74%), Positives = 210/250 (84%)

>emb|CAB49901.1| (AJ248286) lamB-like lactam utilization related protein [Pyrococcus
           abyssi]
          Length = 255

 Score =  210 bits (534), Expect = 7e-54
 Identities = 104/247 (42%), Positives = 160/247 (64%), Gaps = 4/247 (1%)








 
Structural Features:
COG1540, Uncharacterized_proteins, Uncharacterized proteins, homologs 
of lactam utilization protein B
CD-Length = 252 residues, 100.0% aligned
Score =  337 bits (865), Expect = 1e-93
Identities = 123/254 (48%), Positives = 163/254 (64%), Gaps = 4/254 (1%)

pfam03746, LamB_YcsF, LamB/YcsF family. 
CD-Length = 242 residues, 100.0% aligned
Score =  324 bits (833), Expect = 4e-90
Identities = 122/244 (50%), Positives = 155/244 (63%), Gaps = 4/244 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6355




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23497




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33784




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3176_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3176
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5107
                           PA0492_tr
                           translation of PA0492
                           252
                           99.20
                           99.20
                           0
                           1288.0
     

     
     
143255
                           gb|AAG03881.1|AE004486_10
                           (AE004486) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           252
                           99.20
                           99.20
                           0
                           1288.0
     

     
     
143256
                           gb|AAN68528.1|AE016485_1
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           252
                           75.00
                           84.52
                           0
                           991.0
     

     
     
143257
                           gb|AAO56429.1|
                           (AE016866) LamB/YcsF family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           252
                           73.80
                           83.33
                           1
                           983.0
     

     
     
143271
                           emb|CAE35088.1|
                           (BX640451) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           254
                           44.48
                           55.90
                           6
                           495.0
     

     






      

          
GC ORFID: 46178How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0492Glimmer Score: 

          
Start: 6366041Stop: 6366799

          
Length: 759


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0492 translation of PA0492Homolog Bit Score 500.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2721 (ORF: BLASTX 382.0), psyr_15may02_Scaffold2_revised_gene3358 (ORF: BLASTX 219.0), t_PA2112 (ORF: BLASTX 188.0), t_PA4511 (ORF: BLASTX 174.0), t_PA0492 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGAAGTCGACTTCAATTCCGACATGGGCGAAGGCTTCGGCCCATGGACCATCGGCGATGGCGTGGAT 
GCCGCGATCATGCCGCTGATCAGCAGCGCCAACATCGCCACCGGTTTCCATGCCGGCGACCCGAGCAGCATG 
CGCCGCACCGTGGAGATGGCCGCCGAGCATGGCGTGGCCATCGGCGCCCATCCGGGCTTCCGCGACCTGGTC 
GGCTTCGGTCGCCGGCACATCGCCGCGCCGGCCATCGAGCTGGTCAACGACATGCTCTACCAGCTTGGCGCC 
CTGCGCGAATTCGCCCGGCTGCAGGGCCTGTCGCTGCAACACGTCAAGCCCCACGGCGCGCTCTACATGCAC 
CTGGCGCGCGACGAGGCCGCCGCGCGCCTGTTCGTCGAGACCCTGCAACGCCTGGAACCGGAACTGCTGCTC 
TATTGCATGCCCGGTTCGGCCACCTGGCGCATCGGTCGGGAACTGGGCCAGCCGCTGGTGCGCGAGTTCTAC 
GCCGACCGCGACTACGACCGTAGCGGCTCCATCGTCTTCACCCGGCGGGTCGCCGCCCTCGATCCGCAACAG 
GTCGCCGACAAGGTCCTGCGCGCCTGCCGCGAGGGCAAGGTGCGCACCGTCGAGGGCGAGGACCTCGACATC 
GCCTTCGACTCGGTGTGCATCCACAGCGACACCCCCGGCGCCCTGGAGCTGGTCGCCAGCACCCGCGCGCGC 
CTGGAAGGCGCCGGCATCCGCATCAAGGCGCCGCGTTGA