ViewGene
Locus Name:
GeneID:
Location:

GeneID:3175
TrivialName: PA14_04950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04950
PAO1 Ortholog Locus:PA0378
Sequence Length:732
Protein Length:243
Start: 437679
Stop: 436948
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03767.1|AE004475_9 (AE004475) probable transglycosylase [Pseudomonas aeruginosa PAO1]
Identities = 243/243 (100%), Positives = 243/243 (100%)
Sequence:
ATGGCCGCCCCCTTCTTCCAAGCCAAGCCGCGCATGTTGCGATCCCTGTTCCGCCGCCTGTTCAAGTACCTG
CTCTGGTTCATGGCCGCCAGCGTCGTGCTGGTCGCGGTCCTGCGCTGGGTGCCGCCACCGGGGACCATGGTC
ATGGTCGAACGCAAGGTCGGCTCCTGGGTCGACGGCCAGCCCATCGACCTGCAGCGCGACTGGCGCTCCTGG
GAGCAGTTGCCGGACAGCCTGAAGGTCGCGGTGATCGCCGGCGAGGACCAGCACTTCGCCGAGCACCACGGC
TTCGACCTGCCGGCCATCCAGCAGGCCCTCGCGCACAACGAGCGCGGCGGCAGTATCCGCGGCGCCAGTACG
CTCAGCCAGCAAGTGGCGAAGAACGTCTTCCTCTGGTCCGGGCGCAGTTGGCTGCGCAAGGGCCTGGAGGCC
TGGTTCACCCTGCTGATCGAGACGCTCTGGACCAAGCAACGGATTCTCGAGGTCTACCTGAACAGCGCCGAA
TGGGGCCCGGGCGTCTTCGGCGCGCAGGCTGCGGCACGCTATCACTTCGGCCTCGACGCCGAGCGCCTGAGC
CGCACCCAGGCCAGCCAGCTCGCCGCGGTGCTGCCCAGCCCGCTGAAATGGAGCGCGGCCAGGCCGGGCCCC
TACGTGCGCCAGCGCGCGGCCTGGATTCGCCAGCAGATGTGGCAGTTGGGCGGCGACGACTACCTGCTGCGC
CTGGAGCGCTGA
Translation:
MAAPFFQAKPRMLRSLFRRLFKYLLWFMAASVVLVAVLRWVPPPGTMVMVERKVGSWVDGQPIDLQRDWRSW
EQLPDSLKVAVIAGEDQHFAEHHGFDLPAIQQALAHNERGGSIRGASTLSQQVAKNVFLWSGRSWLRKGLEA
WFTLLIETLWTKQRILEVYLNSAEWGPGVFGAQAAARYHFGLDAERLSRTQASQLAAVLPSPLKWSAARPGP
YVRQRAAWIRQQMWQLGGDDYLLRLER*
AnnotationID:3183GeneID:3175
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 06:06:42
Gene Name:
Confidence Code:3
GeneProduct:putative transglycosylase
Cell Localization:()
Synonyms:mtgA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:putative monofunctional biosynthetic peptidoglycan transglycosylase
Functional Category Confidence Code:5
COGs:pfam00912
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70672.1|AE016710_17 (AE016793) monofunctional biosynthetic peptidoglycan
           transglycosylase [Pseudomonas putida KT2440]
          Length = 236

 Score =  371 bits (953), Expect = e-102
 Identities = 177/231 (76%), Positives = 198/231 (85%)

>gb|AAO53975.1| (AE016857) monofunctional biosynthetic peptidoglycan
           transglycosylase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 236

 Score =  338 bits (867), Expect = 2e-92
 Identities = 160/227 (70%), Positives = 190/227 (83%)

>gb|AAM42136.1| (AE012399) monofunctional biosynthetic peptidoglycan
           transglycosylase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 246

 Score =  257 bits (656), Expect = 5e-68
 Identities = 128/230 (55%), Positives = 166/230 (72%), Gaps = 1/230 (0%)






 
Structural Features:
pfam00912, Transgly, Transglycosylase.
CD-Length = 169 residues,  95.3% aligned
Score =  195 bits (498), Expect = 4e-51
Identities = 63/161 (39%), Positives = 97/161 (60%), Gaps = 6/161 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6353




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23495




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33724




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3175_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3175
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5106
                           PA0378_tr
                           translation of PA0378
                           243
                           99.99
                           99.99
                           0
                           1287.0
     

     
     
143210
                           gb|AAG03767.1|AE004475_9
                           (AE004475) probable transglycosylase [Pseudomonas aeruginosa PAO1]
                           243
                           99.99
                           99.99
                           0
                           1287.0
     

     
     
143211
                           gb|AAN70672.1|AE016710_17
                           (AE016793) monofunctional biosynthetic peptidoglycan transglycosylase [Pseudomonas putida KT2440]
                           247
                           71.65
                           80.16
                           15
                           952.0
     

     
     
143212
                           gb|AAO53975.1|
                           (AE016857) monofunctional biosynthetic peptidoglycan transglycosylase [Pseudomonas syringae pv. tomato str. DC3000]
                           247
                           65.18
                           77.32
                           15
                           866.0
     

     
     
143213
                           gb|AAM42136.1|
                           (AE012399) monofunctional biosynthetic peptidoglycan transglycosylase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           253
                           51.38
                           66.40
                           17
                           650.0
     

     






      

          
GC ORFID: 46177How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0378Glimmer Score: 

          
Start: 6239021Stop: 6238290

          
Length: 732


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0378 translation of PA0378Homolog Bit Score 500.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6813 (ORF: BLASTX 340.0), t_PA0378 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGCCCCCTTCTTCCAAGCCAAGCCGCGCATGTTGCGATCCCTGTTCCGCCGCCTGTTCAAGTACCTG 
CTCTGGTTCATGGCCGCCAGCGTCGTGCTGGTCGCGGTCCTGCGCTGGGTGCCGCCACCGGGGACCATGGTC 
ATGGTCGAACGCAAGGTCGGCTCCTGGGTCGACGGCCAGCCCATCGACCTGCAGCGCGACTGGCGCTCCTGG 
GAGCAGTTGCCGGACAGCCTGAAGGTCGCGGTGATCGCCGGCGAGGACCAGCACTTCGCCGAGCACCACGGC 
TTCGACCTGCCGGCCATCCAGCAGGCCCTCGCGCACAACGAGCGCGGCGGCAGTATCCGCGGCGCCAGTACG 
CTCAGCCAGCAAGTGGCGAAGAACGTCTTCCTCTGGTCCGGGCGCAGTTGGCTGCGCAAGGGCCTGGAGGCC 
TGGTTCACCCTGCTGATCGAGACGCTCTGGACCAAGCAACGGATTCTCGAGGTCTACCTGAACAGCGCCGAA 
TGGGGCCCGGGCGTCTTCGGCGCGCAGGCTGCGGCACGCTATCACTTCGGCCTCGACGCCGAGCGCCTGAGC 
CGCACCCAGGCCAGCCAGCTCGCCGCGGTGCTGCCCAGCCCGCTGAAATGGAGCGCGGCCAGGCCGGGCCCC 
TACGTGCGCCAGCGCGCGGCCTGGATTCGCCAGCAGATGTGGCAGTTGGGCGGCGACGACTACCTGCTGCGC 
CTGGAGCGCTGA