ViewGene
Locus Name:
GeneID:
Location:

GeneID:3174
TrivialName: PA14_02910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02910
PAO1 Ortholog Locus:PA0236
Sequence Length:780
Protein Length:259
Start: 256416
Stop: 257195
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03625.1|AE004461_8 (AE004461) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 258/259 (99%), Positives = 258/259 (99%)
Sequence:
ATGGCCGGTAGCCTCATCGAACGCGCCCTCGGCTTGCTCGAACTCCTCGCCAGCGATGCCCGCGGCCTGCCC
CTGCAACAACTGGCGGACCGCCTGGATATCCCCAAGAGCGCCGCGCACCGCATGCTCGCCGAGCTGATCCGG
CTCGGCTACGTGCGCCAGGACCACGACACCAGCCGCTACCGCCTCAGCACCCGCCTGGCCGCGCTGGGCTTC
CGCTTCCTCGCGTCCAGCGGGGTGGTCGACCTGGTCCAGCCGGTGCTCGACGGGCTCGCCCGGGAGACCGGC
GAACTGGTGCGCCTGGGGGTGATCGAAGGCGATCGCCAGACCTGGATCGCCAAGTCCCAGGGCGCCACCTCC
GGGCTACGCTACGACCCCGACATGGGGCGCGAGGCGCCGCTGTTCTACACCGCGTCCGGGCACGCCTGGCTG
GCCAGCCTGAGCGACAAGGCGGCGCTGGCGCTGGTGGAGCGCCAGGGCGTAGGGGCGGCGCGGGACTTCGGT
CCCAACGCGCCGCGCTCCAGGAGCGAGCTGCTGCGTTACCTGAAGCGCGCCCGCGAGCACGGCTATGCCTGG
CAGATCGAATGCTCGGCGCCGGGCATGGCGGCGATGGCCGCACTGGTGCGCCACCCCGAGGACGGACGGGCT
CTCGGCGTGCTCAGCGTGGCCGGGCCGAGCGCACGCTTCGGCGAGGCGCGCATGCACGAACTGGCGCCCCTG
CTCCTGGCCGCGGCGCAGGACCTGTCCCACGCCAGCCAGGCGTCCGAGCTGTTTCGCTGA
Translation:
MAGSLIERALGLLELLASDARGLPLQQLADRLDIPKSAAHRMLAELIRLGYVRQDHDTSRYRLSTRLAALGF
RFLASSGVVDLVQPVLDGLARETGELVRLGVIEGDRQTWIAKSQGATSGLRYDPDMGREAPLFYTASGHAWL
ASLSDKAALALVERQGVGAARDFGPNAPRSRSELLRYLKRAREHGYAWQIECSAPGMAAMAALVRHPEDGRA
LGVLSVAGPSARFGEARMHELAPLLLAAAQDLSHASQASELFR*
AnnotationID:3182GeneID:3174
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 18:06:30
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, IclR family
Cell Localization:()
Synonyms:PA0236
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1414,pfam01614
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68209.1|AE016454_4 (AE016783) transcriptional regulator, IclR family [Pseudomonas
           putida KT2440]
          Length = 258

 Score =  345 bits (884), Expect = 2e-94
 Identities = 176/258 (68%), Positives = 209/258 (81%), Gaps = 1/258 (0%)

>dbj|BAC48930.1| (AP005948) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 290

 Score =  261 bits (667), Expect = 3e-69
 Identities = 131/251 (52%), Positives = 179/251 (71%)








 
Structural Features:
COG1414, IclR, Transcriptional regulator [Transcription]
CD-Length = 246 residues,  98.0% aligned
Score =  181 bits (461), Expect = 6e-47
Identities = 104/246 (42%), Positives = 141/246 (57%), Gaps = 5/246 (2%)

pfam01614, IclR, Bacterial transcriptional regulator.
CD-Length = 188 residues, 100.0% aligned
Score =  105 bits (263), Expect = 6e-24
Identities = 65/192 (33%), Positives = 96/192 (50%), Gaps = 5/192 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6351




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23493




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33586




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3174_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3174
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5105
                           PA0236_tr
                           translation of PA0236
                           259
                           99.61
                           99.61
                           0
                           1288.0
     

     
     
143207
                           gb|AAG03625.1|AE004461_8
                           (AE004461) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           259
                           99.61
                           99.61
                           0
                           1288.0
     

     
     
143208
                           gb|AAN68209.1|AE016454_4
                           (AE016783) transcriptional regulator, IclR family [Pseudomonas putida KT2440]
                           259
                           67.95
                           80.69
                           1
                           885.0
     

     
     
143209
                           dbj|BAC48930.1|
                           (AP005948) transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110]
                           290
                           45.51
                           62.41
                           31
                           659.0
     

     






      

          
GC ORFID: 46176How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0236Glimmer Score: 

          
Start: 6057757Stop: 6058536

          
Length: 780


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0236 translation of PA0236Homolog Bit Score 500.0

          
Other Homologs:  t_PA0236 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGGTAGCCTCATCGAACGCGCCCTCGGCTTGCTCGAACTCCTCGCCAGCGATGCCCGCGGCCTGCCC 
CTGCAACAACTGGCGGACCGCCTGGATATCCCCAAGAGCGCCGCGCACCGCATGCTCGCCGAGCTGATCCGG 
CTCGGCTACGTGCGCCAGGACCACGACACCAGCCGCTACCGCCTCAGCACCCGCCTGGCCGCGCTGGGCTTC 
CGCTTCCTCGCGTCCAGCGGGGTGGTCGACCTGGTCCAGCCGGTGCTCGACGGGCTCGCCCGGGAGACCGGC 
GAACTGGTGCGCCTGGGGGTGATCGAAGGCGATCGCCAGACCTGGATCGCCAAGTCCCAGGGCGCCACCTCC 
GGGCTACGCTACGACCCCGACATGGGGCGCGAGGCGCCGCTGTTCTACACCGCGTCCGGGCACGCCTGGCTG 
GCCAGCCTGAGCGACAAGGCGGCGCTGGCGCTGGTGGAGCGCCAGGGCGTAGGGGCGGCGCGGGACTTCGGT 
CCCAACGCGCCGCGCTCCAGGAGCGAGCTGCTGCGTTACCTGAAGCGCGCCCGCGAGCACGGCTATGCCTGG 
CAGATCGAATGCTCGGCGCCGGGCATGGCGGCGATGGCCGCACTGGTGCGCCACCCCGAGGACGGACGGGCT 
CTCGGCGTGCTCAGCGTGGCCGGGCCGAGCGCACGCTTCGGCGAGGCGCGCATGCACGAACTGGCGCCCCTG 
CTCCTGGCCGCGGCGCAGGACCTGTCCCACGCCAGCCAGGCGTCCGAGCTGTTTCGCTGA