ViewGene
Locus Name:
GeneID:
Location:

GeneID:3171
TrivialName: PA14_72880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72880
PAO1 Ortholog Locus:PA5524
Sequence Length:783
Protein Length:260
Start: 6490547
Stop: 6491329
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08909.1|AE004965_1 (AE004965) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 259/260 (99%), Positives = 259/260 (99%)
Sequence:
ATGAACGATTTTCCGAAGTGGACAGGCCAGGTCGCGCTCATCAGCGGCGCCGGCAGCGAACTCGGCATCGGT
TTCGCCATTGCCCGGCGGCTGGCCCGCGAAGGCGTGCGCCTGCTGATCACCGCCAGCAGCGAGCGGATTAGG
CAACGAGCGGAGGAACTGAGCGCATGTGGTCACGACGTGCGCGCCGCGAGCGCCGACCTGACCGACGAAGCC
CAGGTGCAGGGTCTGCTGGACTGGGCCGAAGCCCAGTGGGGACGGGTCGACATCCTGGTGAACAATGCCGGC
ATGGCCCAGTTGGACAGCGCGGAGCCCTTCAGCGCAGTGGAAGCGACCTCGCTGCGGGATTGGCAACTGTCC
CTGTCGCGCAACCTGACCAGTGCTTTCCTGCTCACCCGCGGCCTGCTGCCGGGCATGCGCGAGCGCGGCTAC
GGGCGGATCGTCAACGTCGCCTCCACCACCGGAACCCGCGGCAGCAACCCGGGCGAAGCCGCGTATAGCGCG
GCCAAGGCCGGTCTGGTCGGCTGGAGCATGGGCCTGGCGCTGGAGGTGGCGAAGAGCGGCATCACGGTGAAC
AGCGTCGCGCCGGGCTGGATCGCCACCGCCTCGAGCACCGCCGAAGAACGCCAGGCCGCCCTGGCCAGCCCC
AGCGGACGTGCCGGCCGGCCCGAAGAGGTGGCCGCCGCGGTTGCCTTCCTCGCCTCGCCCGAAGCCAGCTTC
GTCAACGGCGAACTGCTGGTGGTGGACGGCGGCAACTGCCTGATCGAAAACAAACGGAGCTGA
Translation:
MNDFPKWTGQVALISGAGSELGIGFAIARRLAREGVRLLITASSERIRQRAEELSACGHDVRAASADLTDEA
QVQGLLDWAEAQWGRVDILVNNAGMAQLDSAEPFSAVEATSLRDWQLSLSRNLTSAFLLTRGLLPGMRERGY
GRIVNVASTTGTRGSNPGEAAYSAAKAGLVGWSMGLALEVAKSGITVNSVAPGWIATASSTAEERQAALASP
SGRAGRPEEVAAAVAFLASPEASFVNGELLVVDGGNCLIENKRS*
AnnotationID:3179GeneID:3171
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 10:10:14
Gene Name:
Confidence Code:3
GeneProduct:putative short chain dehydrogenase
Cell Localization:()
Synonyms:fabG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:putative 3-oxoacyl-[acyl-carrier-protein] reductase
Functional Category Confidence Code:5
COGs:pfam00106,COG1028
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF95169.1| (AE004276) 3-oxoacyl-(acyl-carrier-protein) reductase [Vibrio
           cholerae]
          Length = 248

 Score =  175 bits (443), Expect = 3e-43
 Identities = 108/259 (41%), Positives = 160/259 (61%), Gaps = 15/259 (5%)








 
Structural Features:
pfam00106, adh_short, short chain dehydrogenase.
CD-Length = 247 residues, 100.0% aligned
Score =  189 bits (481), Expect = 3e-49
Identities = 107/256 (41%), Positives = 141/256 (55%), Gaps = 24/256 (9%)
 
COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  98.0% aligned
Score =  157 bits (398), Expect = 1e-39
Identities = 118/257 (45%), Positives = 156/257 (60%), Gaps = 24/257 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6345




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23487




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33312




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3171_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3171
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5099
                           PA5524_tr
                           translation of PA5524
                           260
                           99.61
                           99.61
                           0
                           1289.0
     

     
     
143062
                           gb|AAG08909.1|AE004965_1
                           (AE004965) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           260
                           99.61
                           99.61
                           0
                           1289.0
     

     
     
143063
                           gb|AAF95169.1|
                           (AE004276) 3-oxoacyl-(acyl-carrier-protein) reductase [Vibrio cholerae O1 biovar eltor str. N16961]
                           264
                           40.90
                           60.60
                           20
                           459.0
     

     
     
143073
                           dbj|BAC91447.1|
                           (AP006580) 3-oxoacyl-[acyl-carrier protein] reductase [Gloeobacter violaceus PCC 7421]
                           264
                           40.15
                           56.43
                           20
                           418.0
     

     
     
143067
                           gb|AAN42716.1|AE015136_10
                           (AE015136) 3-oxoacyl-[acyl-carrier-protein] reductase [Shigella flexneri 2a str. 301]
                           269
                           39.77
                           59.47
                           34
                           435.0
     

     






      

          
GC ORFID: 46173How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5524Glimmer Score: 

          
Start: 5754236Stop: 5755018

          
Length: 783


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5524 translation of PA5524Homolog Bit Score 501.0

          
Other Homologs:  t_PA1827 (ORF: BLASTX 162.0), psyr_15may02_Scaffold5_revised_gene6243 (ORF: BLASTX 129.0), t_PA5524 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGATTTTCCGAAGTGGACAGGCCAGGTCGCGCTCATCAGCGGCGCCGGCAGCGAACTCGGCATCGGT 
TTCGCCATTGCCCGGCGGCTGGCCCGCGAAGGCGTGCGCCTGCTGATCACCGCCAGCAGCGAGCGGATTAGG 
CAACGAGCGGAGGAACTGAGCGCATGTGGTCACGACGTGCGCGCCGCGAGCGCCGACCTGACCGACGAAGCC 
CAGGTGCAGGGTCTGCTGGACTGGGCCGAAGCCCAGTGGGGACGGGTCGACATCCTGGTGAACAATGCCGGC 
ATGGCCCAGTTGGACAGCGCGGAGCCCTTCAGCGCAGTGGAAGCGACCTCGCTGCGGGATTGGCAACTGTCC 
CTGTCGCGCAACCTGACCAGTGCTTTCCTGCTCACCCGCGGCCTGCTGCCGGGCATGCGCGAGCGCGGCTAC 
GGGCGGATCGTCAACGTCGCCTCCACCACCGGAACCCGCGGCAGCAACCCGGGCGAAGCCGCGTATAGCGCG 
GCCAAGGCCGGTCTGGTCGGCTGGAGCATGGGCCTGGCGCTGGAGGTGGCGAAGAGCGGCATCACGGTGAAC 
AGCGTCGCGCCGGGCTGGATCGCCACCGCCTCGAGCACCGCCGAAGAACGCCAGGCCGCCCTGGCCAGCCCC 
AGCGGACGTGCCGGCCGGCCCGAAGAGGTGGCCGCCGCGGTTGCCTTCCTCGCCTCGCCCGAAGCCAGCTTC 
GTCAACGGCGAACTGCTGGTGGTGGACGGCGGCAACTGCCTGATCGAAAACAAACGGAGCTGA