ViewGene
Locus Name:
GeneID:
Location:

GeneID:3170
TrivialName: PA14_62190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62190
PAO1 Ortholog Locus:PA4699
Sequence Length:780
Protein Length:259
Start: 5549883
Stop: 5549104
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08085.1|AE004884_3 (AE004884) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 259/259 (100%), Positives = 259/259 (100%)
Sequence:
GTGAAGAAGATTTTCGTATTCGCCGCGCTTGCCGGCAGTGCCGTGCTCGCGGGCTGCGCCAGCCCGCAGCAC
GGGGCGATCCCGGTGGTGGATTCCGGTACTCCGGTGTCCAACCAGGAAAGCGGCGGTTTCCGCATCACCCGT
ACCCAGGTACCGCGTACCCAGCAAGGCGCCGCCACCCAGGGCATTCCCCAGGGCGGCGACTCCGGCGTGGTG
GTGATGGTGCCGCAGGGCGCCAATTCCGCACCGATCCAGACTTTCCCGGCGCAGTCCGGCGCCGCGCCGATC
AGCAGCGCTCCGCTCGGCACCGGCACCCAGTACCAGGCTCCGCCCAGCAGCGCCTCCACGCCACCGCTGGGC
GGCAGCTACAACATGCCGCCCAGCGGCGCCAGTCGTTCCGCGCCCACCGGCATTCCGGCCTCCGGCTCGGCC
GGCAGCCTGGCGGCCGACGAGCAGTTGGACGGGCCGGTCCTGGCGATGCTCACAACCGCCCAGCAACAGCAG
GGCAGCGGCGACCTGAACAGCGCCGCCGCCAGCCTCGAGCGAGCCCAGCGCATCGCTCCGCGCGAGCCGCAG
GTGCTCTATCGCCTGGCCCAGGTGCGCCTGGCCCAGGGCGATGCGGCTCAGGCCGAGCAGGTCGCGCGCCGT
GGCTTGAGCTACGCCAATGGCCGGCCGGCCTTGCAGGCCGGGCTCTGGGAACTGATCGCCCAGGCGCGGGAG
AAGCAGGGAGACTCCGCCGGCGCTGCGCTGGCCCGGCAGAAGGCCAAGGTCAGCTCCTGA
Translation:
MKKIFVFAALAGSAVLAGCASPQHGAIPVVDSGTPVSNQESGGFRITRTQVPRTQQGAATQGIPQGGDSGVV
VMVPQGANSAPIQTFPAQSGAAPISSAPLGTGTQYQAPPSSASTPPLGGSYNMPPSGASRSAPTGIPASGSA
GSLAADEQLDGPVLAMLTTAQQQQGSGDLNSAAASLERAQRIAPREPQVLYRLAQVRLAQGDAAQAEQVARR
GLSYANGRPALQAGLWELIAQAREKQGDSAGAALARQKAKVSS*
AnnotationID:3178GeneID:3170
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 21:09:21
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4699
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70255.1|AE016665_8 (AE016791) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 266

 Score =  284 bits (726), Expect = 4e-76
 Identities = 162/265 (61%), Positives = 188/265 (70%), Gaps = 16/265 (6%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14753




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23485




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37621




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3170_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3170
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5098
                           PA4699_tr
                           translation of PA4699
                           259
                           99.99
                           99.99
                           0
                           1290.0
     

     
     
143059
                           gb|AAG08085.1|AE004884_3
                           (AE004884) hypothetical protein PA4699 [Pseudomonas aeruginosa PAO1]
                           259
                           99.61
                           99.99
                           0
                           1287.0
     

     
     
143060
                           gb|AAN70255.1|AE016665_8
                           (AE016791) lipoprotein, putative [Pseudomonas putida KT2440]
                           280
                           59.64
                           69.64
                           35
                           744.0
     

     
     
143061
                           gb|AAO54512.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           277
                           56.67
                           68.95
                           39
                           690.0
     

     






      

          
GC ORFID: 46172How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4699Glimmer Score: 

          
Start: 4813563Stop: 4812784

          
Length: 780


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4699 translation of PA4699Homolog Bit Score 501.0

          
Other Homologs:  psyr_15may02_Scaffold19_revised_gene2871 (ORF: BLASTX 257.0), t_PA4699 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAGAAGATTTTCGTATTCGCCGCGCTTGCCGGCAGTGCCGTGCTCGCGGGCTGCGCCAGCCCGCAGCAC 
GGGGCGATCCCGGTGGTGGATTCCGGTACTCCGGTGTCCAACCAGGAAAGCGGCGGTTTCCGCATCACCCGT 
ACCCAGGTACCGCGTACCCAGCAAGGCGCCGCCACCCAGGGCATTCCCCAGGGCGGCGACTCCGGCGTGGTG 
GTGATGGTGCCGCAGGGCGCCAATTCCGCACCGATCCAGACTTTCCCGGCGCAGTCCGGCGCCGCGCCGATC 
AGCAGCGCTCCGCTCGGCACCGGCACCCAGTACCAGGCTCCGCCCAGCAGCGCCTCCACGCCACCGCTGGGC 
GGCAGCTACAACATGCCGCCCAGCGGCGCCAGTCGTTCCGCGCCCACCGGCATTCCGGCCTCCGGCTCGGCC 
GGCAGCCTGGCGGCCGACGAGCAGTTGGACGGGCCGGTCCTGGCGATGCTCACAACCGCCCAGCAACAGCAG 
GGCAGCGGCGACCTGAACAGCGCCGCCGCCAGCCTCGAGCGAGCCCAGCGCATCGCTCCGCGCGAGCCGCAG 
GTGCTCTATCGCCTGGCCCAGGTGCGCCTGGCCCAGGGCGATGCGGCTCAGGCCGAGCAGGTCGCGCGCCGT 
GGCTTGAGCTACGCCAATGGCCGGCCGGCCTTGCAGGCCGGGCTCTGGGAACTGATCGCCCAGGCGCGGGAG 
AAGCAGGGAGACTCCGCCGGCGCTGCGCTGGCCCGGCAGAAGGCCAAGGTCAGCTCCTGA