ViewGene
Locus Name:
GeneID:
Location:

GeneID:317
TrivialName: PA14_61300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61300
PAO1 Ortholog Locus:PA4633
Sequence Length:2139
Protein Length:712
Start: 5472466
Stop: 5474604
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08021.1|AE004877_8 (AE004877) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 708/712 (99%), Positives = 710/712 (99%)
Sequence:
ATGAAGCTCAAGTCGATCCAGTTTTCTGTCGCCGCCCTCGCCGGCGCCAGCGTTCTAAGCGTCGTCGTGGTG
CTGGTGCTGTACGCCCTGTTCGCCGGCGCGCGAACGCAGGAGCTGGTGCAGCAACGCACCCAGGGCCTGTTG
GAGAAGGTCATCAACGAGCGCCTGGTGGCCCTGGCCCGCGCCCAGGTCAGCCAGATCCAGCGCGAGCTGGAG
TATCCGCTGACGGTGGTCCACGGCCTGGCCAACAGCACCCGCCTGCTCGGCGAGCCGGGCGCCGACGGCATG
CCGCAGCTGAACGCCAGCCGCGACGAAATCTCCGCGCTGCTGCGCAGCACCGTACAGAACAACCCCAAGCTG
CTCGACACCTTCATGGCCTGGGAAGCCAATGCCTTCGATACCGATGCCGCCTTCGCCGGGCAACCCGGCAAG
GGCTACGGCCCGGACGGCCGCTACCTGCCCTGGTGGTATCGCGGCGCCGACGGCAAGCCGATCGTGGAGGCC
ATGGCCGACAGCATCGATAGCGAAAAGCTGCTGCCCACCGGGGTGCGCGAGAACGAGTTCTACGCCTGTCCG
AAAGAGAACAAGCGTCCCTGCATCATCGACCCGGCCCCCTACGAAATGGGCGGCAAGACCGTGATGATGTCG
TCCTTCAACGTGCCGATCATGGTCGGCGACCAGTTCCGCGGCGCAGTCGGCGCCGACCTCTCGCTGGCCTTC
ATCCAGGACCTGCTCAAGCGCGCCGACCAGCAGCTCTACGATGGCGCCGGGGAAATGGCGCTGATCGCCAGC
AACGGCCGCCTGGTGGCCTACACCCGCGACGACAGCAAGCTCGGCGAGCCCGCCGGCAGCGTCCTCGACAGC
AACGAAGTGGACAACCTGAAGAACCTCACGATCGACCAGCCGCTCTACGACATCGACGCCGAGCACGGCCAC
ATCGAGCTGTTCCTGCCTTTCACCATCGCCGACAGCGGCGTGCGCTGGACCCTCATGCTGCAGATTCCCCAG
GCGGCGGTATTCGGCGAACTGCAGCAACTCCAGGGCGAGCTGAGCGACCAGCGCCAGCAGGATATCCTCGGC
ATGAGCCTGGCCGGCCTGGTGGTAGCGGCCCTCGGCCTGCTGGTGGTCTGGCTGGTCGGCTACGGCATCGCC
CGGCCGCTGCGCCAACTGGTCGGCATGCTCGACGACATCGCCCAGGGCGAAGGCGACCTTACCCGCCGCCTG
AGCAGCGAGCGCGCCGACGAGCTGGGCTCCATCGCCAAGGGCTTCAACACCTTCCTCGGCAAGCTGCAGAAC
ATGATCGGCCAGGTGGTGCAATCGGTGCAGAAGGTCAGCGACTCCTCGGAGCACACCGCCGACATCGCCATC
CGCACCAACCAGGGCGTGCAGCAGCAACTGGCGGAGATCGAACTGGTGGCCACCGCGGTCCACGAGATGACC
GCCACCGCCCAGGACGTGGCGCGCAACGCCACCCACGCCGCCGAGGCAGCCAACCACGCGGACCAGGCCGCG
CACCAGGGCAAGCAGATCGTCGAAAGCAGCTCGGCGGCGATCCAGGCCCTGGCCAGCGAGATCGGCCGCGCG
GTCGGCGTGGTGCAGAACCTGGCCAAGGACAGCGAAAACATCAACGCGATCCTGGTGGCGATCCGCGGTATC
GCCGAGCAGACCAACCTGCTCGCCCTCAACGCCGCCATCGAGGCCGCCCGCGCCGGCGAGCAGGGTCGCGGT
TTCGCGGTGGTGGCCGACGAGGTACGCAACCTGGCGCAGAAGACCCAGCAGGCCACCGAAGAAATCCAGAGC
ATGATCCAGCAGTTGCAGCAGGGCACCCGCGACGTGGTGAAGGTCATGCAGGACAGCCAGGACCGCACCGAC
GACAGCGTGCGCCATGCGCGCCAGGCGGCCGAAGCGCTGGAGTCGATCACCCAGGCGGTATCGGTGATCAAC
GACATGAACACCCAGATCGCCAGCGCCGCCGAGGAGCAGAGCGCGGTGGCCGAGGACATCAACCGCAACGTC
GCCAACATCGGCCAGGTCGCCAACCAGGTGGCCGGCGGCGCCGACGAGGCCTCGCAGGCCAGCGCCGAGCTG
ACCCGCCTGGCCGAGCAGCAGCGGCGCCTGGTGAATCAGTTCAGGGTCTAG
Translation:
MKLKSIQFSVAALAGASVLSVVVVLVLYALFAGARTQELVQQRTQGLLEKVINERLVALARAQVSQIQRELE
YPLTVVHGLANSTRLLGEPGADGMPQLNASRDEISALLRSTVQNNPKLLDTFMAWEANAFDTDAAFAGQPGK
GYGPDGRYLPWWYRGADGKPIVEAMADSIDSEKLLPTGVRENEFYACPKENKRPCIIDPAPYEMGGKTVMMS
SFNVPIMVGDQFRGAVGADLSLAFIQDLLKRADQQLYDGAGEMALIASNGRLVAYTRDDSKLGEPAGSVLDS
NEVDNLKNLTIDQPLYDIDAEHGHIELFLPFTIADSGVRWTLMLQIPQAAVFGELQQLQGELSDQRQQDILG
MSLAGLVVAALGLLVVWLVGYGIARPLRQLVGMLDDIAQGEGDLTRRLSSERADELGSIAKGFNTFLGKLQN
MIGQVVQSVQKVSDSSEHTADIAIRTNQGVQQQLAEIELVATAVHEMTATAQDVARNATHAAEAANHADQAA
HQGKQIVESSSAAIQALASEIGRAVGVVQNLAKDSENINAILVAIRGIAEQTNLLALNAAIEAARAGEQGRG
FAVVADEVRNLAQKTQQATEEIQSMIQQLQQGTRDVVKVMQDSQDRTDDSVRHARQAAEALESITQAVSVIN
DMNTQIASAAEEQSAVAEDINRNVANIGQVANQVAGGADEASQASAELTRLAEQQRRLVNQFRV*
AnnotationID:327GeneID:317
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 14:02:19
Gene Name:
Confidence Code:3
GeneProduct:putative methyl-accepting chemotaxis protein (MCP)
Cell Localization:()
Synonyms:PA4633
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66852.1|AE016313_11 (AE016778) methyl-accepting chemotaxis transducer [Pseudomonas
           putida KT2440]
          Length = 688

 Score =  481 bits (1239), Expect = e-135
 Identities = 288/710 (40%), Positives = 416/710 (58%), Gaps = 30/710 (4%)

>gb|AAN69158.1|AE016549_7 (AE016787) methyl-accepting chemotaxis transducer [Pseudomonas
           putida KT2440]
          Length = 714

 Score =  466 bits (1199), Expect = e-130
 Identities = 271/710 (38%), Positives = 417/710 (58%), Gaps = 4/710 (0%)






 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  90.9% aligned
Score =  231 bits (589), Expect = 5e-61
Identities = 131/376 (34%), Positives = 212/376 (56%), Gaps = 5/376 (1%)

smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer). 
CD-Length = 262 residues,  96.9% aligned
Score =  205 bits (524), Expect = 2e-53
Identities = 104/254 (40%), Positives = 163/254 (64%)

pfam00015, MCPsignal, Methyl-accepting chemot
CD-Length = 251 residues,  99.6% aligned
Score =  196 bits (499), Expect = 2e-50
Identities = 110/250 (44%), Positives = 163/250 (65%)






   
Genomic Context:






   
Comment:


















    ReferenceID:637




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17779




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31589




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:317_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:317
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
516
                           PA4633_tr
                           translation of PA4633
                           712
                           99.43
                           99.71
                           0
                           3504.0
     

     
     
25987
                           gb|AAG08021.1|AE004877_8
                           (AE004877) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           712
                           99.43
                           99.71
                           0
                           3504.0
     

     
     
25988
                           gb|AAN66852.1|AE016313_11
                           (AE016778) methyl-accepting chemotaxis transducer [Pseudomonas putida KT2440]
                           716
                           40.22
                           58.10
                           32
                           1261.0
     

     
     
25994
                           gb|AAN65951.1|AE016223_5
                           (AE016775) methyl-accepting chemotaxis transducer [Pseudomonas putida KT2440]
                           756
                           31.61
                           47.22
                           155
                           803.0
     

     
     
25997
                           gb|AAG06040.1|AE004694_3
                           (AE004694) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           735
                           31.42
                           46.39
                           197
                           754.0
     

     






      

          
GC ORFID: 43319How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4633Glimmer Score: 

          
Start: 4736146Stop: 4738284

          
Length: 2139


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4633 translation of PA4633Homolog Bit Score 1354.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3803 (ORF: BLASTX 287.0), t_PA2652 (ORF: BLASTX 286.0), psyr_15may02_Scaffold1_revised_gene618 (ORF: BLASTX 285.0), psyr_15may02_Scaffold2_revised_gene4151 (ORF: BLASTX 284.0), t_PA2920 (ORF: BLASTX 263.0), psyr_15may02_Scaffold13_revised_gene2252 (ORF: BLASTX 251.0), t_PA1251 (ORF: BLASTX 244.0), t_PA1608 (ORF: BLASTX 244.0), t_PA2561 (ORF: BLASTX 242.0), psyr_15may02_Scaffold1_revised_gene392 (ORF: BLASTX 241.0), psyr_15may02_Scaffold9_revised_gene7996 (ORF: BLASTX 241.0), t_PA2867 (ORF: BLASTX 234.0), psyr_15may02_Scaffold1_revised_gene1081 (ORF: BLASTX 234.0), psyr_15may02_Scaffold4_revised_gene5598 (ORF: BLASTX 231.0), psyr_15may02_Scaffold5_revised_gene6405 (ORF: BLASTX 207.0), t_PA4633 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCTCAAGTCGATCCAGTTTTCTGTCGCCGCCCTCGCCGGCGCCAGCGTTCTAAGCGTCGTCGTGGTG 
CTGGTGCTGTACGCCCTGTTCGCCGGCGCGCGAACGCAGGAGCTGGTGCAGCAACGCACCCAGGGCCTGTTG 
GAGAAGGTCATCAACGAGCGCCTGGTGGCCCTGGCCCGCGCCCAGGTCAGCCAGATCCAGCGCGAGCTGGAG 
TATCCGCTGACGGTGGTCCACGGCCTGGCCAACAGCACCCGCCTGCTCGGCGAGCCGGGCGCCGACGGCATG 
CCGCAGCTGAACGCCAGCCGCGACGAAATCTCCGCGCTGCTGCGCAGCACCGTACAGAACAACCCCAAGCTG 
CTCGACACCTTCATGGCCTGGGAAGCCAATGCCTTCGATACCGATGCCGCCTTCGCCGGGCAACCCGGCAAG 
GGCTACGGCCCGGACGGCCGCTACCTGCCCTGGTGGTATCGCGGCGCCGACGGCAAGCCGATCGTGGAGGCC 
ATGGCCGACAGCATCGATAGCGAAAAGCTGCTGCCCACCGGGGTGCGCGAGAACGAGTTCTACGCCTGTCCG 
AAAGAGAACAAGCGTCCCTGCATCATCGACCCGGCCCCCTACGAAATGGGCGGCAAGACCGTGATGATGTCG 
TCCTTCAACGTGCCGATCATGGTCGGCGACCAGTTCCGCGGCGCAGTCGGCGCCGACCTCTCGCTGGCCTTC 
ATCCAGGACCTGCTCAAGCGCGCCGACCAGCAGCTCTACGATGGCGCCGGGGAAATGGCGCTGATCGCCAGC 
AACGGCCGCCTGGTGGCCTACACCCGCGACGACAGCAAGCTCGGCGAGCCCGCCGGCAGCGTCCTCGACAGC 
AACGAAGTGGACAACCTGAAGAACCTCACGATCGACCAGCCGCTCTACGACATCGACGCCGAGCACGGCCAC 
ATCGAGCTGTTCCTGCCTTTCACCATCGCCGACAGCGGCGTGCGCTGGACCCTCATGCTGCAGATTCCCCAG 
GCGGCGGTATTCGGCGAACTGCAGCAACTCCAGGGCGAGCTGAGCGACCAGCGCCAGCAGGATATCCTCGGC 
ATGAGCCTGGCCGGCCTGGTGGTAGCGGCCCTCGGCCTGCTGGTGGTCTGGCTGGTCGGCTACGGCATCGCC 
CGGCCGCTGCGCCAACTGGTCGGCATGCTCGACGACATCGCCCAGGGCGAAGGCGACCTTACCCGCCGCCTG 
AGCAGCGAGCGCGCCGACGAGCTGGGCTCCATCGCCAAGGGCTTCAACACCTTCCTCGGCAAGCTGCAGAAC 
ATGATCGGCCAGGTGGTGCAATCGGTGCAGAAGGTCAGCGACTCCTCGGAGCACACCGCCGACATCGCCATC 
CGCACCAACCAGGGCGTGCAGCAGCAACTGGCGGAGATCGAACTGGTGGCCACCGCGGTCCACGAGATGACC 
GCCACCGCCCAGGACGTGGCGCGCAACGCCACCCACGCCGCCGAGGCAGCCAACCACGCGGACCAGGCCGCG 
CACCAGGGCAAGCAGATCGTCGAAAGCAGCTCGGCGGCGATCCAGGCCCTGGCCAGCGAGATCGGCCGCGCG 
GTCGGCGTGGTGCAGAACCTGGCCAAGGACAGCGAAAACATCAACGCGATCCTGGTGGCGATCCGCGGTATC 
GCCGAGCAGACCAACCTGCTCGCCCTCAACGCCGCCATCGAGGCCGCCCGCGCCGGCGAGCAGGGTCGCGGT 
TTCGCGGTGGTGGCCGACGAGGTACGCAACCTGGCGCAGAAGACCCAGCAGGCCACCGAAGAAATCCAGAGC 
ATGATCCAGCAGTTGCAGCAGGGCACCCGCGACGTGGTGAAGGTCATGCAGGACAGCCAGGACCGCACCGAC 
GACAGCGTGCGCCATGCGCGCCAGGCGGCCGAAGCGCTGGAGTCGATCACCCAGGCGGTATCGGTGATCAAC 
GACATGAACACCCAGATCGCCAGCGCCGCCGAGGAGCAGAGCGCGGTGGCCGAGGACATCAACCGCAACGTC 
GCCAACATCGGCCAGGTCGCCAACCAGGTGGCCGGCGGCGCCGACGAGGCCTCGCAGGCCAGCGCCGAGCTG 
ACCCGCCTGGCCGAGCAGCAGCGGCGCCTGGTGAATCAGTTCAGGGTCTAG