ViewGene
Locus Name:
GeneID:
Location:

GeneID:3169
TrivialName: PA14_16630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16630
PAO1 Ortholog Locus:PA3692
Sequence Length:786
Protein Length:261
Start: 1423398
Stop: 1422613
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07080.1|AE004788_10 (AE004788) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 261/261 (100%), Positives = 261/261 (100%)
Sequence:
ATGCGTAAGTACATTGCCCTCCCCGCCGTATCCCTGCTGGCCCTGGCGCTGGCCGCCTGCTCCACGCCGCCG
AACGCCAACCTGGAACAGGCCCGCAGCAACTTCTCCGCGCTGCAGTCGCAGCCCGACGCGACCAAGGTCGCG
GCCCTGGAAACCAAGGACGCCGGCGACTGGCTGGCCAAGGCCGACAAGGCCTACCAGGATGGCGAAGACCAG
CGCGACGTGGACCAACTGGCCTACCTGACCAACCAGCGCATCGAACTGGCCAAGCAGACCATCGTCCTGCGC
AATGCCGAGGCGCAGCTGCAGAACGCCTCCGCCCAGCGCGCCCAGGCCCGCCTCGACGCGCGCACCGCGCAA
CTGGACAAGCTGCGCAGCCAGCTGAATGCCAAGCAGACCTCGCGCGGCACCATGGTGACTTTCGGCGACGTG
CTGTTCGATCTCGACAAGTCCGACCTGAAGCCCGGCGCCATGCGCAACATCCAGCAACTGGCCGAGTTCCTC
CAGCAGAACCCGGAGCGCCAGGTGATCGTAGAGGGCTACACCGATAGCACCGGTTCCGCCAACTACAACCAG
CGCCTGTCCGAGCGTCGTGCCGACTCGGTGCGCATGGCCCTGCTCAGCCGCGGCATCAGCCCGGAACGCGTA
GCCACCCGTGGCTACGGCAAGGAATATCCGGTGGCCAGCAACGGCACCAGCTCCGGCCGTGCCATGAACCGT
CGGGTGGAAGTCACCATTTCCAACGACGCCAAGCCGGTCGCGCCACGCTCCTCCGTCAGCGGCTGA
Translation:
MRKYIALPAVSLLALALAACSTPPNANLEQARSNFSALQSQPDATKVAALETKDAGDWLAKADKAYQDGEDQ
RDVDQLAYLTNQRIELAKQTIVLRNAEAQLQNASAQRAQARLDARTAQLDKLRSQLNAKQTSRGTMVTFGDV
LFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDSTGSANYNQRLSERRADSVRMALLSRGISPERV
ATRGYGKEYPVASNGTSSGRAMNRRVEVTISNDAKPVAPRSSVSG*
AnnotationID:3177GeneID:3169
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 11:11:48
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein, OmpA
Cell Localization:()
Synonyms:PA3692
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2885,pfam00691
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67123.1|AE016341_6 (AE016779) OmpA family protein [Pseudomonas putida KT2440]
          Length = 263

 Score =  368 bits (945), Expect = e-101
 Identities = 184/257 (71%), Positives = 219/257 (85%)

>gb|AAO55026.1| (AE016861) ompA family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 260

 Score =  357 bits (915), Expect = 5e-98
 Identities = 178/259 (68%), Positives = 222/259 (85%)






 
Structural Features:
COG2885, OmpA, Outer membrane protein and related     
peptidoglycan-associated (lipo)proteins 
[Cell envelope biogenesis, outer membrane]
CD-Length = 190 residues, only  60.5% aligned
Score =  133 bits (335), Expect = 5e-32
Identities = 59/115 (51%), Positives = 81/115 (70%)

pfam00691, OmpA, OmpA family. The Pfam entry also includes MotB 
and related proteins.
CD-Length = 96 residues, 100.0% aligned
Score =  110 bits (276), Expect = 4e-25
Identities = 50/96 (52%), Positives = 66/96 (68%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6341




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23483




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31856




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3169_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3169
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5096
                           PA3692_tr
                           translation of PA3692
                           261
                           99.99
                           99.99
                           0
                           1290.0
     

     
     
143024
                           gb|AAG07080.1|AE004788_10
                           (AE004788) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           261
                           99.99
                           99.99
                           0
                           1290.0
     

     
     
143025
                           gb|AAN67123.1|AE016341_6
                           (AE016779) OmpA family protein [Pseudomonas putida KT2440]
                           264
                           70.45
                           83.71
                           4
                           941.0
     

     
     
143026
                           gb|AAO55026.1|
                           (AE016861) ompA family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           261
                           68.19
                           85.05
                           1
                           915.0
     

     
     
143053
                           dbj|BAC59027.1|
                           (AP005075) outer membrane protein OmpA [Vibrio parahaemolyticus]
                           331
                           25.07
                           41.69
                           82
                           243.0
     

     






      

          
GC ORFID: 46171How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3692Glimmer Score: 

          
Start: 3530539Stop: 3531324

          
Length: 786


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3692 translation of PA3692Homolog Bit Score 501.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4818 (ORF: BLASTX 357.0), t_PA3692 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTAAGTACATTGCCCTCCCCGCCGTATCCCTGCTGGCCCTGGCGCTGGCCGCCTGCTCCACGCCGCCG 
AACGCCAACCTGGAACAGGCCCGCAGCAACTTCTCCGCGCTGCAGTCGCAGCCCGACGCGACCAAGGTCGCG 
GCCCTGGAAACCAAGGACGCCGGCGACTGGCTGGCCAAGGCCGACAAGGCCTACCAGGATGGCGAAGACCAG 
CGCGACGTGGACCAACTGGCCTACCTGACCAACCAGCGCATCGAACTGGCCAAGCAGACCATCGTCCTGCGC 
AATGCCGAGGCGCAGCTGCAGAACGCCTCCGCCCAGCGCGCCCAGGCCCGCCTCGACGCGCGCACCGCGCAA 
CTGGACAAGCTGCGCAGCCAGCTGAATGCCAAGCAGACCTCGCGCGGCACCATGGTGACTTTCGGCGACGTG 
CTGTTCGATCTCGACAAGTCCGACCTGAAGCCCGGCGCCATGCGCAACATCCAGCAACTGGCCGAGTTCCTC 
CAGCAGAACCCGGAGCGCCAGGTGATCGTAGAGGGCTACACCGATAGCACCGGTTCCGCCAACTACAACCAG 
CGCCTGTCCGAGCGTCGTGCCGACTCGGTGCGCATGGCCCTGCTCAGCCGCGGCATCAGCCCGGAACGCGTA 
GCCACCCGTGGCTACGGCAAGGAATATCCGGTGGCCAGCAACGGCACCAGCTCCGGCCGTGCCATGAACCGT 
CGGGTGGAAGTCACCATTTCCAACGACGCCAAGCCGGTCGCGCCACGCTCCTCCGTCAGCGGCTGA