ViewGene

Locus Name:
GeneID:
Location:

GeneID:3167
TrivialName: PA14_17450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17450
PAO1 Ortholog Locus:PA3625
Sequence Length:750
Protein Length:249
Start: 1496636
Stop: 1497385
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07013.1|AE004782_11 (AE004782) survival protein SurE [Pseudomonas aeruginosa PAO1]
Identities = 249/249 (100%), Positives = 249/249 (100%)
Sequence:
ATGCGCATACTGATTGCCAACGACGACGGGGTGACCGCACCCGGTATCGCCGCGCTTTACGACGCGCTGGCG
GATCATGCCGATTGCGTAGTGATCGCCCCCGACCAGGACAAGAGCGGCGCCAGCAGTTCCCTGACGCTGGAC
CGCCCGCTGCACCCGCAGCGCCTGGACAACGGATTCATCAGCCTCAACGGCACGCCGACCGACTGCGTGCAC
CTGGGCCTGAACGGCTTGCTGGAGGAATTGCCGGACATGGTGGTCTCGGGTATCAACCTGGGCGCCAACCTC
GGCGATGACGTCCTCTATTCCGGTACCGTGGCGGCGGCCATCGAAGGGCGCTTCCTGAAGGGGCCGGCCTTC
GCCTTCTCGCTGGTCTCGCGGTTGACGGACAACCTGCCCACCGCCATGCACTTCGCCCGCCTGCTGGTCTCC
GCCCACGAGCGCCTGGCCGTGCCGCCGCGTACCGTGCTCAACGTCAATATCCCGAACCTGCCGCTGGATCGC
GTACGCGGTATCCAGCTGACCCGCCTCGGGCACCGCGCCCGTGCCGCCGCACCGGTGAAGGTGGTCAATCCG
CGCGGCAAGGAAGGCTACTGGATCGCCGCGGCCGGCGATGCCGAGGATGGCGGGCCGGGGACGGATTTCCAC
GCGGTCATGCAAGGCTACGTGTCGATCACTCCGTTGCAGCTGGACCGTACCTTCCACGAAGCCTTCGGCGGC
CTCGACGAGTGGCTGGGAGGACTGACGTGA
Translation:
MRILIANDDGVTAPGIAALYDALADHADCVVIAPDQDKSGASSSLTLDRPLHPQRLDNGFISLNGTPTDCVH
LGLNGLLEELPDMVVSGINLGANLGDDVLYSGTVAAAIEGRFLKGPAFAFSLVSRLTDNLPTAMHFARLLVS
AHERLAVPPRTVLNVNIPNLPLDRVRGIQLTRLGHRARAAAPVKVVNPRGKEGYWIAAAGDAEDGGPGTDFH
AVMQGYVSITPLQLDRTFHEAFGGLDEWLGGLT*
AnnotationID:3175GeneID:3167
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 18:06:04
Gene Name:surE
Confidence Code:2
GeneProduct:putative stationary-phase survival protein SurE
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:putative acid phosphatase
Functional Category Confidence Code:5
COGs:COG0496,pfam01975
Secondary Functional Category(ies):
EC Number:3.1.3.2
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67241.1|AE016351_3 (AE016780) stationary-phase survival protein SurE [Pseudomonas
           putida KT2440]
          Length = 249

 Score =  421 bits (1083), Expect = e-117
 Identities = 209/248 (84%), Positives = 224/248 (90%)

>gb|AAO10008.1|AE016802_51 (AE016802) Predicted acid phosphatase [Vibrio vulnificus CMCP6]
          Length = 255

 Score =  250 bits (639), Expect = 5e-66
 Identities = 128/246 (52%), Positives = 172/246 (69%), Gaps = 3/246 (1%)

>gb|AAO91167.1| (AE016965) stationary-phase survival protein SurE [Coxiella
           burnetii RSA 493]
          Length = 232

 Score =  239 bits (611), Expect = 8e-63
 Identities = 119/223 (53%), Positives = 157/223 (70%)
Structural Features:
COG0496, SurE, Predicted acid phosphatase
CD-Length = 252 residues, 100.0% aligned
Score =  310 bits (796), Expect = 2e-85
Identities = 142/252 (56%), Positives = 172/252 (68%), Gaps = 6/252 (2%)

pfam01975, SurE, Survival protein SurE.
CD-Length = 191 residues,  96.9% aligned
Score =  190 bits (483), Expect = 4e-49
Identities = 97/185 (52%), Positives = 125/185 (67%), Gaps = 5/185 (2%)
Genomic Context:
Comment:
ReferenceID:6337
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23479
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31917
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3167_cdd.html
URL:
ReferenceID:34181
Author/Investigator(s): Li C, Ichikawa JK, Ravetto JJ, Kuo HC, Fu JC, Clarke S.
Title: A new gene involved in stationary-phase survival located at 59 minutes on the Escherichia coli chromosome.
PubMed: 7928962
MedLine:
Source:
J Bacteriol. 1994 Oct;176(19):6015-22.

Erratum in:
    * J Bacteriol 1996 Apr;178(7):2159.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7928962
Homologs By Global Alignment
Gene ID:3167

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5094 PA3625_tr translation of PA3625 249 99.99 99.99 0 1291.0
142851 gb|AAG07013.1|AE004782_11 (AE004782) survival protein SurE [Pseudomonas aeruginosa PAO1] 249 99.99 99.99 0 1291.0
142852 gb|AAN67241.1|AE016351_3 (AE016780) stationary-phase survival protein SurE [Pseudomonas putida KT2440] 249 83.93 89.95 0 1082.0
142853 gb|AAO55082.1| (AE016861) stationary-phase survival protein SurE [Pseudomonas syringae pv. tomato str. DC3000] 249 79.51 88.75 0 1045.0
142856 emb|CAD84861.1| (BX321859) Survival protein SurE [Nitrosomonas europaea ATCC 19718] 255 52.54 68.23 14 655.0
GC ORFID: 46169How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3625Glimmer Score:
Start: 3457301Stop: 3456552
Length: 750
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3625 translation of PA3625Homolog Bit Score 501.0
Other Homologs: t_PA3625 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCATACTGATTGCCAACGACGACGGGGTGACCGCACCCGGTATCGCCGCGCTTTACGACGCGCTGGCG
GATCATGCCGATTGCGTAGTGATCGCCCCCGACCAGGACAAGAGCGGCGCCAGCAGTTCCCTGACGCTGGAC
CGCCCGCTGCACCCGCAGCGCCTGGACAACGGATTCATCAGCCTCAACGGCACGCCGACCGACTGCGTGCAC
CTGGGCCTGAACGGCTTGCTGGAGGAATTGCCGGACATGGTGGTCTCGGGTATCAACCTGGGCGCCAACCTC
GGCGATGACGTCCTCTATTCCGGTACCGTGGCGGCGGCCATCGAAGGGCGCTTCCTGAAGGGGCCGGCCTTC
GCCTTCTCGCTGGTCTCGCGGTTGACGGACAACCTGCCCACCGCCATGCACTTCGCCCGCCTGCTGGTCTCC
GCCCACGAGCGCCTGGCCGTGCCGCCGCGTACCGTGCTCAACGTCAATATCCCGAACCTGCCGCTGGATCGC
GTACGCGGTATCCAGCTGACCCGCCTCGGGCACCGCGCCCGTGCCGCCGCACCGGTGAAGGTGGTCAATCCG
CGCGGCAAGGAAGGCTACTGGATCGCCGCGGCCGGCGATGCCGAGGATGGCGGGCCGGGGACGGATTTCCAC
GCGGTCATGCAAGGCTACGTGTCGATCACTCCGTTGCAGCTGGACCGTACCTTCCACGAAGCCTTCGGCGGC
CTCGACGAGTGGCTGGGAGGACTGACGTGA