ViewGene
Locus Name:
GeneID:
Location:

GeneID:3165
TrivialName: PA14_25420
AnnotatorUID: danlee
Modification Date/Time:2006-06-03 01:01:21
LocusName:PA14_25420
PAO1 Ortholog Locus:PA2989
Sequence Length:765
Protein Length:254
Start: 2222351
Stop: 2221587
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06377.1|AE004724_6 (AE004724) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 252/254 (99%), Positives = 252/254 (99%)
Sequence:
ATGGCTGCGACGTTTGGCCCGCGTATAGCGCGTGCCGATGAAAACGGACAGGGGTCTGAACATGTCGCCCTT
AGCTGGCAGAAAATGGATGCGTCGGGATGGCGAAGTGGCGAGGCATCGCCGGCGGCCTTACACTCTGACCAT
CACTGCCGCCGTGGGTTCGCCATGTCCACTCGTGACGCGGATGACCGCCGCGAATACTACCGTATCGAAGAT
ACCCTCGCACTGGAATTTCGCCCTGCCGGGGCCGTCGAAGACAGCCTGGAGAGCGAGCCGGGGGCCACCCTG
TTCAGCCTGCTCAGCGACCTCCACCTGATGGATTACGAGTCGCAGCACCTGCTGCGCCACATCAGCGAACGC
GACCGCACGCTGGCCAACTACCTGAAGGTGATGAACAAGCGCATCGACCTGCTTGGCCAGGTCATGGTGCAG
AGCCTGCTCAAGGAGATCGGCGAACCGCGCAAGGTCAGCCTGTCCGAGGGGGGCGTCAGCTTCCACCACGAC
CGCGCTTTGCCGGTCGGCCAGTTGCTCGTCCTGCGCATGGTCCTGTTGCCGCAGGGGTTCGGCCTCGAACTG
CGGGCCCGGGTAATCCACGCCCAGCCACACGACGACGAATTCGAGATCGGCACCGAGTTCGAAGCGTTGAGC
GACGCACAGCGCCAGTTGCTGGCCCGGCATATCCTCCAGAAGCAGGCCCAGCAGCGCCGCCTGGCACGGGCC
GGACAGGGCCCGCTCGGCGAGCCGGGCCAACCTTCTTCGACCTGA
Translation:
MAATFGPRIARADENGQGSEHVALSWQKMDASGWRSGEASPAALHSDHHCRRGFAMSTRDADDRREYYRIED
TLALEFRPAGAVEDSLESEPGATLFSLLSDLHLMDYESQHLLRHISERDRTLANYLKVMNKRIDLLGQVMVQ
SLLKEIGEPRKVSLSEGGVSFHHDRALPVGQLLVLRMVLLPQGFGLELRARVIHAQPHDDEFEIGTEFEALS
DAQRQLLARHILQKQAQQRRLARAGQGPLGEPGQPSST*
AnnotationID:3173GeneID:3165
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 13:01:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2989
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6333




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23475




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3165
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5092
                           PA2989_tr
                           translation of PA2989
                           254
                           99.21
                           99.21
                           0
                           1290.0
     

     
     
142842
                           gb|AAG06377.1|AE004724_6
                           (AE004724) hypothetical protein PA2989 [Pseudomonas aeruginosa PAO1]
                           254
                           99.21
                           99.21
                           0
                           1290.0
     

     
     
142843
                           gb|AAN67766.1|AE016408_4
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           259
                           38.99
                           52.50
                           70
                           473.0
     

     






      

          
GC ORFID: 46167How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2989Glimmer Score: 

          
Start: 2731574Stop: 2732338

          
Length: 765


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2989 translation of PA2989Homolog Bit Score 501.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene518 (ORF: BLASTX 187.0), t_PA2989 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGCGACGTTTGGCCCGCGTATAGCGCGTGCCGATGAAAACGGACAGGGGTCTGAACATGTCGCCCTT 
AGCTGGCAGAAAATGGATGCGTCGGGATGGCGAAGTGGCGAGGCATCGCCGGCGGCCTTACACTCTGACCAT 
CACTGCCGCCGTGGGTTCGCCATGTCCACTCGTGACGCGGATGACCGCCGCGAATACTACCGTATCGAAGAT 
ACCCTCGCACTGGAATTTCGCCCTGCCGGGGCCGTCGAAGACAGCCTGGAGAGCGAGCCGGGGGCCACCCTG 
TTCAGCCTGCTCAGCGACCTCCACCTGATGGATTACGAGTCGCAGCACCTGCTGCGCCACATCAGCGAACGC 
GACCGCACGCTGGCCAACTACCTGAAGGTGATGAACAAGCGCATCGACCTGCTTGGCCAGGTCATGGTGCAG 
AGCCTGCTCAAGGAGATCGGCGAACCGCGCAAGGTCAGCCTGTCCGAGGGGGGCGTCAGCTTCCACCACGAC 
CGCGCTTTGCCGGTCGGCCAGTTGCTCGTCCTGCGCATGGTCCTGTTGCCGCAGGGGTTCGGCCTCGAACTG 
CGGGCCCGGGTAATCCACGCCCAGCCACACGACGACGAATTCGAGATCGGCACCGAGTTCGAAGCGTTGAGC 
GACGCACAGCGCCAGTTGCTGGCCCGGCATATCCTCCAGAAGCAGGCCCAGCAGCGCCGCCTGGCACGGGCC 
GGACAGGGCCCGCTCGGCGAGCCGGGCCAACCTTCTTCGACCTGA