ViewGene

Locus Name:
GeneID:
Location:

GeneID:3164
TrivialName: PA14_38590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38590
PAO1 Ortholog Locus:PA2003
Sequence Length:771
Protein Length:256
Start: 3443343
Stop: 3444113
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05391.1|AE004626_10 (AE004626) 3-hydroxybutyrate dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 254/256 (99%), Positives = 254/256 (99%)
Sequence:
ATGACCCTGAAAGGCAAGACCGCCCTGGTCACCGGTTCCACCAGCGGCATCGGCCTGGGCATCGCCCTGAGC
CTGGCCGAGGCCGGCGCCGACCTGCTCCTCAACGGCTTCGGTGAGGTCGACGCGGCGCTGGCGCAGGTCCGC
GCCCGCGGCGTGCGCGCAGAGCACCACCCGGCCGACCTCTCCAGCCCGGAGCAGATCGGCGAACTGATGGCC
TTCGCCGAGCGGACCTTCGGCGGCGTCGACATCCTCGTCAACAACGCCGGCATCCAGTACGTGGCGCCGGTG
CAGGAATTCCCCATGGAACGCTGGGACGCGATCATCGCGATCAACCTGTCCTCGGTGTTCCATACCACCCGC
CTGGCCCTGCCGGGCATGCTCGCGCGCGGCTGGGGGCGGATCGTCAACATCGCCTCGACCCACGGCCTGGTC
GCCTCAGCCGGGAAGAGCGCCTACGTCGCCGCCAAGCATGGCGTGCTCGGCCTGACCAAGAGTGTGGCGCTG
GAAACGGCGCGCACGCCGGTGACCTGCAACGCCATCTGCCCCGGCTGGGTGCTGACCCCGCTGGTGCAGAAG
CAGATCGACGCGCGCATCGCCGAGGGCGTCTCGCCCGAACAGGCGGAACACGACCTGCTGGCGGAAAAGCAA
CCCTCGCTGGCCTTCGTCACCCCCGAGCAACTCGGCGGACTGACGCTGTTCCTTTGCAGCGAAGCCGCCGAC
CAGGTGCGCGGCGCGGCCTGGAACATGGATGGCGGCTGGGTGGCGCAGTAG
Translation:
MTLKGKTALVTGSTSGIGLGIALSLAEAGADLLLNGFGEVDAALAQVRARGVRAEHHPADLSSPEQIGELMA
FAERTFGGVDILVNNAGIQYVAPVQEFPMERWDAIIAINLSSVFHTTRLALPGMLARGWGRIVNIASTHGLV
ASAGKSAYVAAKHGVLGLTKSVALETARTPVTCNAICPGWVLTPLVQKQIDARIAEGVSPEQAEHDLLAEKQ
PSLAFVTPEQLGGLTLFLCSEAADQVRGAAWNMDGGWVAQ*
AnnotationID:3172GeneID:3164
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 17:05:08
Gene Name:bdhA
Confidence Code:2
GeneProduct:3-hydroxybutyrate dehydrogenase
Cell Localization:()
Synonyms:hbdH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:beta-hydroxybutyrate dehydrogenase
Functional Category Confidence Code:5
COGs:pfam00106,COG1028
Secondary Functional Category(ies):central intermediary metabolism
EC Number:1.1.1.30
Status:ACTIVE
Pathway:
Homology:
>emb|CAC35773.1| (AJ310211) beta-D-hydroxybutyrate dehydrogenase [Pseudomonas
           putida]
          Length = 256

 Score =  384 bits (985), Expect = e-106
 Identities = 193/256 (75%), Positives = 213/256 (83%)

>gb|AAD33952.1|AF145230_1 (AF145230) beta-hydroxybutyrate dehydrogenase [Ralstonia eutropha]
          Length = 258

 Score =  346 bits (887), Expect = 9e-95
 Identities = 172/257 (66%), Positives = 209/257 (81%), Gaps = 3/257 (1%)

>dbj|BAC46753.1| (AP005940) 3-hydroxybutyrate dehydrogenase [Bradyrhizobium
           japonicum USDA 110]
          Length = 262

 Score =  281 bits (718), Expect = 3e-75
 Identities = 142/260 (54%), Positives = 189/260 (72%), Gaps = 5/260 (1%)
Structural Features:
pfam00106, adh_short, short chain dehydrogenase. 
CD-Length = 247 residues, 100.0% aligned
Score =  191 bits (487), Expect = 6e-50
Identities = 97/249 (38%), Positives = 134/249 (53%), Gaps = 5/249 (2%)

COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues, 100.0% aligned
Score =  166 bits (422), Expect = 2e-42
Identities = 104/262 (39%), Positives = 139/262 (53%), Gaps = 19/262 (7%)
Genomic Context:
Comment:
ReferenceID:6331
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23473
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32724
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3164_cdd.html
URL:
ReferenceID:34379
Author/Investigator(s): Walter KA, Bennett GN, Papoutsakis ET.
Title: Molecular characterization of two Clostridium acetobutylicum ATCC 824 butanol dehydrogenase isozyme genes.
PubMed: 1385386
MedLine:
Source:
J Bacteriol. 1992 Nov;174(22):7149-58.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1385386
Homologs By Global Alignment
Gene ID:3164

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5091 PA2003_tr translation of PA2003 256 99.21 99.21 0 1290.0
142795 gb|AAG05391.1|AE004626_10 (AE004626) 3-hydroxybutyrate dehydrogenase [Pseudomonas aeruginosa PAO1] 256 99.21 99.21 0 1290.0
142796 emb|CAC35773.1| (AJ310211) beta-D-hydroxybutyrate dehydrogenase [Pseudomonas putida] 256 75.39 83.20 0 985.0
142797 gb|AAN68681.1|AE016497_6 (AE016785) 3-hydroxybutyrate dehydrogenase [Pseudomonas putida KT2440] 256 73.82 82.42 0 969.0
142798 gb|AAF75282.1|AF271714_1 (AF271714) beta-hydroxybutyrate dehydrogenase [Pseudomonas sp. GM101] 256 71.09 80.07 1 921.0
GC ORFID: 46166How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2003Glimmer Score:
Start: 1510568Stop: 1509798
Length: 771
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2003 translation of PA2003Homolog Bit Score 501.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6243 (ORF: BLASTX 134.0), t_PA2003 (ORF: GLIMMER)
GC ORF Sequence
ATGACCCTGAAAGGCAAGACCGCCCTGGTCACCGGTTCCACCAGCGGCATCGGCCTGGGCATCGCCCTGAGC
CTGGCCGAGGCCGGCGCCGACCTGCTCCTCAACGGCTTCGGTGAGGTCGACGCGGCGCTGGCGCAGGTCCGC
GCCCGCGGCGTGCGCGCAGAGCACCACCCGGCCGACCTCTCCAGCCCGGAGCAGATCGGCGAACTGATGGCC
TTCGCCGAGCGGACCTTCGGCGGCGTCGACATCCTCGTCAACAACGCCGGCATCCAGTACGTGGCGCCGGTG
CAGGAATTCCCCATGGAACGCTGGGACGCGATCATCGCGATCAACCTGTCCTCGGTGTTCCATACCACCCGC
CTGGCCCTGCCGGGCATGCTCGCGCGCGGCTGGGGGCGGATCGTCAACATCGCCTCGACCCACGGCCTGGTC
GCCTCAGCCGGGAAGAGCGCCTACGTCGCCGCCAAGCATGGCGTGCTCGGCCTGACCAAGAGTGTGGCGCTG
GAAACGGCGCGCACGCCGGTGACCTGCAACGCCATCTGCCCCGGCTGGGTGCTGACCCCGCTGGTGCAGAAG
CAGATCGACGCGCGCATCGCCGAGGGCGTCTCGCCCGAACAGGCGGAACACGACCTGCTGGCGGAAAAGCAA
CCCTCGCTGGCCTTCGTCACCCCCGAGCAACTCGGCGGACTGACGCTGTTCCTTTGCAGCGAAGCCGCCGAC
CAGGTGCGCGGCGCGGCCTGGAACATGGATGGCGGCTGGGTGGCGCAGTAG