ViewGene

Locus Name:
GeneID:
Location:

GeneID:3162
TrivialName: PA14_67210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67210
PAO1 Ortholog Locus:
Sequence Length:876
Protein Length:291
Start: 5999494
Stop: 5998619
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08473.1|AE004921_10 (AE004921) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 236/285 (82%), Positives = 253/285 (88%)
Sequence:
ATGCGAATCTCTATTGGTCTATTCATTTTCCTGTTGAGTTTCGGAGTTCCCGCTATGGCCGACAGTAAGCCG
TTCATCTGCGTTAATGAGAAAGACCATTTGCCACCTCTCGATCCCCAGGCCGATGCCTGGTATCGGGAAGCA
GTTGCGCTAGCTAAGCCTGACGCCTTGCGTCCTTGGGGACGTATTGTGGACTTATACAGTAAGGCAGTTGAG
CGTGGGCATTGGAAGGCGATGCATAATTTGGCGAATCTTTATCGCACAGGGTGGCCCGGAGGGGTAGAAAAA
GATACGCAGAAGGCATTGGATCTCTATCAAAAGATGATCGATCTGGAGGTGCCCCAAGGGTTCTATGATATG
GGAGCAATGATCGGCAATCGTGCAGGGGTCATGAATCCTGCAACTGACGGGCTTAGTTTTCTTAATAAGGCT
GCTAGCCTAGGAAATCCGCCGGCATTAACCGAGCTAGGTAAGCTCTATATATATGTGGCCAAAAAAAAGGAT
TTGGGGTTGGCGTATACTCACTGTGCTGCTAGCCAGGGCTATGCGCCGGCTAGTTATGAGTTGGGGGCGTAT
TACAAGATAGTAGAGCATAATTTTCCAAAAGCATTGGGTTATTATCAGGCGTCAGTCTCTCAGGGCGGAAAG
AGTGCGGCTTTATTTATCTCCGGTGTTTTTGATAAAGCCAGTCCTGATGTCGATAGAATGTGGTACGCACCC
GATGAGAAATTGCGCAAATTATATGATGGTATTTACGATAAACTTGCCGCTGATCCTGATTTTCGTTTTCCC
AACTTGATAAAGGACCATCCTCTACCTTCTCACCCGACCCAGGGCTACGATGCAGATCGGCCCGACTGGAAA
CCGGGGCAGTGA
Translation:
MRISIGLFIFLLSFGVPAMADSKPFICVNEKDHLPPLDPQADAWYREAVALAKPDALRPWGRIVDLYSKAVE
RGHWKAMHNLANLYRTGWPGGVEKDTQKALDLYQKMIDLEVPQGFYDMGAMIGNRAGVMNPATDGLSFLNKA
ASLGNPPALTELGKLYIYVAKKKDLGLAYTHCAASQGYAPASYELGAYYKIVEHNFPKALGYYQASVSQGGK
SAALFISGVFDKASPDVDRMWYAPDEKLRKLYDGIYDKLAADPDFRFPNLIKDHPLPSHPTQGYDADRPDWK
PGQ*
AnnotationID:3170GeneID:3162
AnnotatorUID: danlee
Modification Date/Time: 2006-03-17 13:01:48
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0790
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|9951382|gb|AAG08473.1|  hypothetical protein PA5088 [Pseudomonas aeruginosa PAO1]
 gi|15600281|ref|NP_253775.1|  hypothetical protein PA5088 [Pseudomonas aeruginosa PAO1]
Length=293

 Score =  502 bits (1293),  Expect = 6e-141
 Identities = 236/285 (82%), Positives = 253/285 (88%), Gaps = 0/285 (0%)

gi|9951381|gb|AAG08472.1|  hypothetical protein PA5087 [Pseudomonas aeruginosa PAO1]
 gi|15600280|ref|NP_253774.1|  hypothetical protein PA5087 [Pseudomonas aeruginosa PAO1]
Length=289

 Score =  490 bits (1261),  Expect = 3e-137
 Identities = 228/289 (78%), Positives = 254/289 (87%), Gaps = 0/289 (0%)

gi|9951380|gb|AAG08471.1|  hypothetical protein PA5086 [Pseudomonas aeruginosa PAO1]
 gi|15600279|ref|NP_253773.1|  hypothetical protein PA5086 [Pseudomonas aeruginosa PAO1]
Length=213

 Score =  385 bits (990),  Expect = 8e-106
 Identities = 183/211 (86%), Positives = 191/211 (90%), Gaps = 0/211 (0%)
Structural Features:
COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].
             CD-Length = 292 residues,  99.7% aligned
             Score =  101 bits (252), Expect = 1e-22
Genomic Context:
Comment:
Neighboring genes 2807 (PA14_67190) and 3162 (PA14_67210) each have homology to PA5088, and flank 
PA5087 ortholog (2524, PA14_67200).  3162 (PA14_67210) is in the analogous position as PA5088.
ReferenceID:6327
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23469
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:38067
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3162_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3162

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5087 PA5088_tr translation of PA5088 294 81.97 88.09 4 1295.0
142672 gb|AAG08473.1|AE004921_10 (AE004921) hypothetical protein PA5088 [Pseudomonas aeruginosa PAO1] 294 81.97 88.09 4 1295.0
5088 PA5087_tr translation of PA5087 291 78.35 87.28 2 1261.0
142673 gb|AAG08472.1|AE004921_9 (AE004921) hypothetical protein PA5087 [Pseudomonas aeruginosa PAO1] 291 78.35 87.28 2 1261.0
5089 PA5086_tr translation of PA5086 291 62.88 65.97 78 989.0
GC ORFID: 46164How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5088Glimmer Score:
Start: 5263179Stop: 5262304
Length: 876
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5088 translation of PA5088Homolog Bit Score 502.0
Other Homologs: t_PA5087 (ORF: BLASTX 490.0), t_PA5086 (ORF: BLASTX 385.0)
GC ORF Sequence
ATGCGAATCTCTATTGGTCTATTCATTTTCCTGTTGAGTTTCGGAGTTCCCGCTATGGCCGACAGTAAGCCG
TTCATCTGCGTTAATGAGAAAGACCATTTGCCACCTCTCGATCCCCAGGCCGATGCCTGGTATCGGGAAGCA
GTTGCGCTAGCTAAGCCTGACGCCTTGCGTCCTTGGGGACGTATTGTGGACTTATACAGTAAGGCAGTTGAG
CGTGGGCATTGGAAGGCGATGCATAATTTGGCGAATCTTTATCGCACAGGGTGGCCCGGAGGGGTAGAAAAA
GATACGCAGAAGGCATTGGATCTCTATCAAAAGATGATCGATCTGGAGGTGCCCCAAGGGTTCTATGATATG
GGAGCAATGATCGGCAATCGTGCAGGGGTCATGAATCCTGCAACTGACGGGCTTAGTTTTCTTAATAAGGCT
GCTAGCCTAGGAAATCCGCCGGCATTAACCGAGCTAGGTAAGCTCTATATATATGTGGCCAAAAAAAAGGAT
TTGGGGTTGGCGTATACTCACTGTGCTGCTAGCCAGGGCTATGCGCCGGCTAGTTATGAGTTGGGGGCGTAT
TACAAGATAGTAGAGCATAATTTTCCAAAAGCATTGGGTTATTATCAGGCGTCAGTCTCTCAGGGCGGAAAG
AGTGCGGCTTTATTTATCTCCGGTGTTTTTGATAAAGCCAGTCCTGATGTCGATAGAATGTGGTACGCACCC
GATGAGAAATTGCGCAAATTATATGATGGTATTTACGATAAACTTGCCGCTGATCCTGATTTTCGTTTTCCC
AACTTGATAAAGGACCATCCTCTACCTTCTCACCCGACCCAGGGCTACGATGCAGATCGGCCCGACTGGAAA
CCGGGGCAGTGA