ViewGene

Locus Name:
GeneID:
Location:

GeneID:3161
TrivialName: PA14_57040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57040
PAO1 Ortholog Locus:PA4388
Sequence Length:735
Protein Length:244
Start: 5082488
Stop: 5081754
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07776.1|AE004854_12 (AE004854) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 244/244 (100%), Positives = 244/244 (100%)
Sequence:
TTGAGCGTTGAAGCTGCAAAGAATGCCCGAGAATTGCTGCTCAAGGAATACCGTGCGGTCCTTTCCACCCAC
TCGAAGAAATGGCCGGGCTTTCCTTTCGGCTCGGTGGTTCCCTATTGCCTGGATGCTGAAGGCCGGCCGCTG
ATCCTGATCAGCCGGATCGCCCAGCACACCCACAACCTGCAGGCGGACCCGCGCTGCTCGATGCTGGTAGGC
GAGCGCGGCGCCGAGGATATCCAGGCTGTCGGCCGCCTCACCCTGCTGGCCGAGGCGCGGCAATTGGCGGAG
GAGGAGGTCGCCGCGGCGGCCGAGCGCTATTACCGCTATTTCCCCGAGTCCGCCGACTACCATCGGGTCCAC
GATTTCGATTTCTGGGTGCTGCAGCCGGTCCAGTGGCGTTTCATCGGCGGTTTCGGCGCGATCCACTGGCTG
GCCGCCGAGCGCGTGCCGCTGGCCAATCCGTTCGCCGGAGAAGCCGAGCGCGGCATGGTCGAGCACATGAAC
AGCGACCACGCCGCCGCCATCGCCCACTATGTGGAACTGGCCGGACTGCCGGCGCATGCCGCGGCGCAGCTG
GCGGGAATTGATACAGAAGGTTTCCACCTGCGCATCGGCCAGGGCCTGCACTGGCTGCCGTTCCCCGCCGCC
TGCGGCAACCCCGGGGCCGTGCGCCAGGCGCTGGTGCAACTGGCCAGGGCCGAGCGCTGGCCGACCGTCGAG
CCGGAGCAGGGTTGA
Translation:
MSVEAAKNARELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVG
ERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFWVLQPVQWRFIGGFGAIHWL
AAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYVELAGLPAHAAAQLAGIDTEGFHLRIGQGLHWLPFPAA
CGNPGAVRQALVQLARAERWPTVEPEQG*
AnnotationID:3169GeneID:3161
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 12:12:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4388
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0748
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0748, HugZ, Putative heme iron utilization protein 
[Inorganic ion transport and metabolism]
CD-Length = 245 residues, 100.0% aligned
Score =  238 bits (609), Expect = 9e-64
Identities = 88/247 (35%), Positives = 112/247 (45%), Gaps = 8/247 (3%)
Genomic Context:
Comment:
ReferenceID:14751
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19546
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3161_cdd.html
URL:
ReferenceID:23467
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3161

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5086 PA4388_tr translation of PA4388 244 99.99 99.99 0 1293.0
142670 gb|AAG07776.1|AE004854_12 (AE004854) hypothetical protein PA4388 [Pseudomonas aeruginosa PAO1] 244 99.59 99.99 0 1291.0
142671 gb|AAN66981.1|AE016326_7 (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440] 291 60.13 69.75 49 952.0
GC ORFID: 46163How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4388Glimmer Score:
Start: 4346164Stop: 4345430
Length: 735
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4388 translation of PA4388Homolog Bit Score 502.0
Other Homologs: t_PA4388 (ORF: GLIMMER)
GC ORF Sequence
TTGAGCGTTGAAGCTGCAAAGAATGCCCGAGAATTGCTGCTCAAGGAATACCGTGCGGTCCTTTCCACCCAC
TCGAAGAAATGGCCGGGCTTTCCTTTCGGCTCGGTGGTTCCCTATTGCCTGGATGCTGAAGGCCGGCCGCTG
ATCCTGATCAGCCGGATCGCCCAGCACACCCACAACCTGCAGGCGGACCCGCGCTGCTCGATGCTGGTAGGC
GAGCGCGGCGCCGAGGATATCCAGGCTGTCGGCCGCCTCACCCTGCTGGCCGAGGCGCGGCAATTGGCGGAG
GAGGAGGTCGCCGCGGCGGCCGAGCGCTATTACCGCTATTTCCCCGAGTCCGCCGACTACCATCGGGTCCAC
GATTTCGATTTCTGGGTGCTGCAGCCGGTCCAGTGGCGTTTCATCGGCGGTTTCGGCGCGATCCACTGGCTG
GCCGCCGAGCGCGTGCCGCTGGCCAATCCGTTCGCCGGAGAAGCCGAGCGCGGCATGGTCGAGCACATGAAC
AGCGACCACGCCGCCGCCATCGCCCACTATGTGGAACTGGCCGGACTGCCGGCGCATGCCGCGGCGCAGCTG
GCGGGAATTGATACAGAAGGTTTCCACCTGCGCATCGGCCAGGGCCTGCACTGGCTGCCGTTCCCCGCCGCC
TGCGGCAACCCCGGGGCCGTGCGCCAGGCGCTGGTGCAACTGGCCAGGGCCGAGCGCTGGCCGACCGTCGAG
CCGGAGCAGGGTTGA