ViewGene

Locus Name:
GeneID:
Location:

GeneID:3159
TrivialName: PA14_46890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46890
PAO1 Ortholog Locus:PA1344
Sequence Length:795
Protein Length:264
Start: 4176918
Stop: 4176124
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04733.1|AE004564_2 (AE004564) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 262/264 (99%), Positives = 263/264 (99%)
Sequence:
ATGCAGATCGATCTGAGCGACAAACTGGCAATCGTCAGCGGTTCCACCGCCGGCATCGGCTTCGCCATCGCC
AGCGGCCTCGCCGCCGCCGGCGCCACCGTGGTGGTCAACGGACGCAGCCAGGCGGCGGTGGACCGTGCGATC
GCGGCGATCCGGAACGGCCAGCCGGATGCCAAGGTACGCGGCGTCGCCGGCGACCTGGGCACGGCGGAAGGC
TGCGCGGCTTTCGTCGCGGCCGAGCCGAAGGCGGACATCCTGGTCAACAACCTGGGCATCTTCGAGCTGAAG
GACTTCTTCGACATCGAGGACGCCGAGTGGAGCCGCTTCTTCGAGGTCAACGTGATGTCCGGGGTGCGCCTG
GCCCGCGCCTACGTCCCGGGAATGGTCGAGCGTGGTTGGGGGCGAGTGGTGTTCCTGTCTTCGGAATCGGCG
TTGAACATCCCGGCGGACATGATCCACTACGGCTTCAGCAAGACCGCCAACCTCTCGGTGTCGCGCGGCCTG
GCCAAGCGCCTGGCCGGCACCGGGGTGACGGTGAATGCGGTGCTGCCCGGACCGACCCTCACCGAAGGCGTC
GCCGAGATGCTTCGCGAGGATGCGCAGAAGGCCGGGCAGAGCATAGAAGAGGCCGGCACCGACTTTGTCCGG
CAGCACCGTTCCAGTTCGATCATCCAGCGCCTGGCGACGCCCGAGGAAGTCGCCAACCTGGTGGTCTACACC
TGCTCGACCCAGGCCTCGGCGACCACCGGCGCGGCCCTGCGGGTCGACGGCGGGGTGCTCGACAGCCTGGCC
TGA
Translation:
MQIDLSDKLAIVSGSTAGIGFAIASGLAAAGATVVVNGRSQAAVDRAIAAIRNGQPDAKVRGVAGDLGTAEG
CAAFVAAEPKADILVNNLGIFELKDFFDIEDAEWSRFFEVNVMSGVRLARAYVPGMVERGWGRVVFLSSESA
LNIPADMIHYGFSKTANLSVSRGLAKRLAGTGVTVNAVLPGPTLTEGVAEMLREDAQKAGQSIEEAGTDFVR
QHRSSSIIQRLATPEEVANLVVYTCSTQASATTGAALRVDGGVLDSLA*
AnnotationID:3167GeneID:3159
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 08:08:47
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain dehydrogenase
Cell Localization:()
Synonyms:PA1344
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00106,COG1028
Secondary Functional Category(ies):secondary metabolites, biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAB62055.1| (D85415) probable short-chain dehydrogenase [Pseudomonas putida]
          Length = 264

 Score =  285 bits (728), Expect = 2e-76
 Identities = 146/263 (55%), Positives = 184/263 (69%)

>dbj|BAC68746.1| (AP005025) putative oxidoreductase [Streptomyces avermitilis
           MA-4680]
          Length = 264

 Score =  280 bits (715), Expect = 8e-75
 Identities = 149/263 (56%), Positives = 188/263 (71%), Gaps = 1/263 (0%)

>emb|CAD16847.1| (AL646073) PROBABLE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
          Length = 262

 Score =  276 bits (706), Expect = 9e-74
 Identities = 148/262 (56%), Positives = 182/262 (69%), Gaps = 2/262 (0%)
Structural Features:
pfam00106, adh_short, short chain dehydrogenase. 
CD-Length = 247 residues, 100.0% aligned
Score =  151 bits (383), Expect = 7e-38
Identities = 84/255 (32%), Positives = 123/255 (48%), Gaps = 13/255 (5%)

COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  99.6% aligned
Score =  130 bits (327), Expect = 2e-31
Identities = 91/265 (34%), Positives = 129/265 (48%), Gaps = 23/265 (8%)
Genomic Context:
Comment:
ReferenceID:6321
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23463
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37447
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3159_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3159

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5084 PA1344_tr translation of PA1344 264 99.24 99.62 0 1292.0
142592 gb|AAG04733.1|AE004564_2 (AE004564) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1] 264 99.24 99.62 0 1292.0
142593 dbj|BAC50638.1| (AP005954) bll5373 [Bradyrhizobium japonicum USDA 110] 264 62.50 79.54 2 850.0
142594 emb|CAE28665.1| (BX572603) putative short-chain dehydrogenase [Rhodopseudomonas palustris CGA009] 264 61.74 76.89 0 841.0
142596 dbj|BAC68746.1| (AP005025) putative oxidoreductase [Streptomyces avermitilis MA-4680] 265 56.22 70.94 2 716.0
GC ORFID: 46161How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1344Glimmer Score:
Start: 776991Stop: 777785
Length: 795
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1344 translation of PA1344Homolog Bit Score 502.0
Other Homologs: t_PA1344 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGATCGATCTGAGCGACAAACTGGCAATCGTCAGCGGTTCCACCGCCGGCATCGGCTTCGCCATCGCC
AGCGGCCTCGCCGCCGCCGGCGCCACCGTGGTGGTCAACGGACGCAGCCAGGCGGCGGTGGACCGTGCGATC
GCGGCGATCCGGAACGGCCAGCCGGATGCCAAGGTACGCGGCGTCGCCGGCGACCTGGGCACGGCGGAAGGC
TGCGCGGCTTTCGTCGCGGCCGAGCCGAAGGCGGACATCCTGGTCAACAACCTGGGCATCTTCGAGCTGAAG
GACTTCTTCGACATCGAGGACGCCGAGTGGAGCCGCTTCTTCGAGGTCAACGTGATGTCCGGGGTGCGCCTG
GCCCGCGCCTACGTCCCGGGAATGGTCGAGCGTGGTTGGGGGCGAGTGGTGTTCCTGTCTTCGGAATCGGCG
TTGAACATCCCGGCGGACATGATCCACTACGGCTTCAGCAAGACCGCCAACCTCTCGGTGTCGCGCGGCCTG
GCCAAGCGCCTGGCCGGCACCGGGGTGACGGTGAATGCGGTGCTGCCCGGACCGACCCTCACCGAAGGCGTC
GCCGAGATGCTTCGCGAGGATGCGCAGAAGGCCGGGCAGAGCATAGAAGAGGCCGGCACCGACTTTGTCCGG
CAGCACCGTTCCAGTTCGATCATCCAGCGCCTGGCGACGCCCGAGGAAGTCGCCAACCTGGTGGTCTACACC
TGCTCGACCCAGGCCTCGGCGACCACCGGCGCGGCCCTGCGGGTCGACGGCGGGGTGCTCGACAGCCTGGCC
TGA