ViewGene
Locus Name:
GeneID:
Location:

GeneID:3158
TrivialName: PA14_54190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54190
PAO1 Ortholog Locus:PA0780
Sequence Length:753
Protein Length:250
Start: 4809567
Stop: 4808815
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04169.1|AE004513_1 (AE004513) proline utilization regulator [Pseudomonas aeruginosa PAO1]
Identities = 250/250 (100%), Positives = 250/250 (100%)
Sequence:
ATGTTCGACACCCGCCTCATCCGTCTGCCCGACCAGTCGCACACCCACGCCCACGAGCATCACCAACTGGTG
ATGTCGCTGGCCGGGCGCGCCGAATTCGAGGTCAACGGCTGTGGCGGGGAAGTCTGCCGGATGCGCGCTTGC
CTGGTGCCGGGCGAGGCGGGCCACGTGTTCGCCGGGGTGGGCGACAACCGCATGCTGATCATCGACCTGGGC
GAGGACAACCCGACCCCGGAAGACCCCGACCTGCTCGCGCGCCTGTTCGAGGCGCCGCGCTACCCGACCCTG
GACGCCGACTTCCAGAACCTGCTCAGCTACGCCGGCGCCGAACTGGCCCGCTACGGCAGCGACCCGCTGCTG
ACCCGTGCCCTCGGCGGAGTGCTGATCCGCGCCCTGCACCTGCGCCTGTTCGGCGAGCAGCAGCCCCTGGCG
GCCAGCGGGCCGCTCGACCTGGAGCGCCTGGACGCGCATATCGTGCGGAACCTGGCGCGGCGCATCACGGTC
GCCGAACTGGCCCAGGTCGCCTGTCTCAGCCCGAGCCATTTCCACGCGCAGTTCAAGGACAGCGTCGGCCTG
ACCCCGCACCAGTACCTGCTCAAGGTCCGCCTCGACTGCGCCGCGCGGTTGCTGCGGGAAAGCCGCTTGCCT
CTGGTGCGGATCGCCGAGGAATGCGGCTTCTCCAGCCAGAGCGCGCTGACCACGGCGATGCGCCGCTACCTG
GGGCTGACGCCGAAGTCGCTGCGCAAGGGCTGA
Translation:
MFDTRLIRLPDQSHTHAHEHHQLVMSLAGRAEFEVNGCGGEVCRMRACLVPGEAGHVFAGVGDNRMLIIDLG
EDNPTPEDPDLLARLFEAPRYPTLDADFQNLLSYAGAELARYGSDPLLTRALGGVLIRALHLRLFGEQQPLA
ASGPLDLERLDAHIVRNLARRITVAELAQVACLSPSHFHAQFKDSVGLTPHQYLLKVRLDCAARLLRESRLP
LVRIAEECGFSSQSALTTAMRRYLGLTPKSLRKG*
AnnotationID:3166GeneID:3158
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 18:06:26
Gene Name:pruR
Confidence Code:1
GeneProduct:proline utilization regulator
Cell Localization:(1) Cytoplasmic
Synonyms:PA0780
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:probable transcriptional regulator
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2207, AraC, AraC-type DNA-binding domain-containing protein...  Score: 96.1, 8e-21






   
Genomic Context:






   
Comment:


















    ReferenceID:6319




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23461




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3158
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5083
                           PA0780_tr
                           translation of PA0780
                           250
                           99.99
                           99.99
                           0
                           1292.0
     

     
     
142591
                           gb|AAG04169.1|AE004513_1
                           (AE004513) proline utilization regulator [Pseudomonas aeruginosa PAO1]
                           250
                           99.99
                           99.99
                           0
                           1292.0
     

     






      

          
GC ORFID: 46160How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0780Glimmer Score: 

          
Start: 144340Stop: 145092

          
Length: 753


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0780 translation of PA0780Homolog Bit Score 502.0

          
Other Homologs:  t_PA0780 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCGACACCCGCCTCATCCGTCTGCCCGACCAGTCGCACACCCACGCCCACGAGCATCACCAACTGGTG 
ATGTCGCTGGCCGGGCGCGCCGAATTCGAGGTCAACGGCTGTGGCGGGGAAGTCTGCCGGATGCGCGCTTGC 
CTGGTGCCGGGCGAGGCGGGCCACGTGTTCGCCGGGGTGGGCGACAACCGCATGCTGATCATCGACCTGGGC 
GAGGACAACCCGACCCCGGAAGACCCCGACCTGCTCGCGCGCCTGTTCGAGGCGCCGCGCTACCCGACCCTG 
GACGCCGACTTCCAGAACCTGCTCAGCTACGCCGGCGCCGAACTGGCCCGCTACGGCAGCGACCCGCTGCTG 
ACCCGTGCCCTCGGCGGAGTGCTGATCCGCGCCCTGCACCTGCGCCTGTTCGGCGAGCAGCAGCCCCTGGCG 
GCCAGCGGGCCGCTCGACCTGGAGCGCCTGGACGCGCATATCGTGCGGAACCTGGCGCGGCGCATCACGGTC 
GCCGAACTGGCCCAGGTCGCCTGTCTCAGCCCGAGCCATTTCCACGCGCAGTTCAAGGACAGCGTCGGCCTG 
ACCCCGCACCAGTACCTGCTCAAGGTCCGCCTCGACTGCGCCGCGCGGTTGCTGCGGGAAAGCCGCTTGCCT 
CTGGTGCGGATCGCCGAGGAATGCGGCTTCTCCAGCCAGAGCGCGCTGACCACGGCGATGCGCCGCTACCTG 
GGGCTGACGCCGAAGTCGCTGCGCAAGGGCTGA