ViewGene
Locus Name:
GeneID:
Location:

GeneID:3157
TrivialName: PA14_06890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06890
PAO1 Ortholog Locus:PA0529
Sequence Length:702
Protein Length:233
Start: 597970
Stop: 598671
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03918.1|AE004489_10 (AE004489) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 233/233 (100%), Positives = 233/233 (100%)
Sequence:
ATGGAGCAGATAGTCGTAAACGGTGTTTTCATAGGTAAAGTCGAAGAAACCTGGGGCGGATTGGTCAGCGCG
ATCGACAAGCTGCCGGTCGAGCAGGAGTTCTGGCTGGGCCACGATGGCCTGCCCGGCGACGAACAGGCTGAC
ATCCGCCACCACGGCGGCCTCGAGCGCGCTCTCCATCACTATCCCGCCGAGCACTACCGCTACTGGCGCAAG
CGCCACCCGCTGAACCGCTGGCAACTGCCGGCGTTCGGCGAGAACATCTCGACCTACGGCATCACCGAAGCC
GAGGTCTGCATCGGCGACCAGTTCCATTGGGGCGATGCCCTGCTGGAAGTCAGCCAGCCGCGTTCGCCCTGC
TATCGCCAGGGCCAGCGCTGGAATCTTCCCGAGCTGCCCGACGAATTGCAGAGCGGCGGCCGCTGCGGCTGG
TTCTATCGGGTCCTGCGCAGCGGCATGGTGACTCCCGGGGACGAGCTGAAGCTGGTCCAGCGGCATTACCCT
GAACTGACCGTCGCCCGCCTGTTGCAGTGGTATTTCGGCGATCCCCTGGAGCCTCTCGGGTTGCGCCAGATG
ATGGCCTGCGACGCGCTCTCCCAGCGTTGGCGCAAGACAGCGGCGAAACGCCTGTCCAGCGGCGTGGTGGAA
GACTGGGGGCCGCGCCTGCGCGGACCGTCGGATTACCGGGAGCATGCCTCTTGA
Translation:
MEQIVVNGVFIGKVEETWGGLVSAIDKLPVEQEFWLGHDGLPGDEQADIRHHGGLERALHHYPAEHYRYWRK
RHPLNRWQLPAFGENISTYGITEAEVCIGDQFHWGDALLEVSQPRSPCYRQGQRWNLPELPDELQSGGRCGW
FYRVLRSGMVTPGDELKLVQRHYPELTVARLLQWYFGDPLEPLGLRQMMACDALSQRWRKTAAKRLSSGVVE
DWGPRLRGPSDYREHAS*
AnnotationID:3165GeneID:3157
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 12:12:48
Gene Name:
Confidence Code:3
GeneProduct:putative sulfurase
Cell Localization:()
Synonyms:PA0529
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03473
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam03473, MOSC, MOSC domain.
CD-Length = 124 residues, 100.0% aligned
Score =  140 bits (354), Expect = 1e-34
Identities = 47/124 (37%), Positives = 60/124 (48%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6317




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23459




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38079




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3157_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3157
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5081
                           PA0529_tr
                           translation of PA0529
                           233
                           99.99
                           99.99
                           0
                           1295.0
     

     
     
142575
                           gb|AAG03918.1|AE004489_10
                           (AE004489) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           233
                           99.99
                           99.99
                           0
                           1295.0
     

     
     
5082
                           PA2229_tr
                           translation of PA2229
                           241
                           41.07
                           56.01
                           10
                           449.0
     

     
     
142577
                           gb|AAG05617.1|AE004649_8
                           (AE004649) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           241
                           41.07
                           56.01
                           10
                           449.0
     

     
     
142576
                           emb|CAD14859.1|
                           (AL646063) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           245
                           39.59
                           57.95
                           16
                           458.0
     

     






      

          
GC ORFID: 46159How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0529Glimmer Score: 

          
Start: 6399312Stop: 6400013

          
Length: 702


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0529 translation of PA0529Homolog Bit Score 503.0

          
Other Homologs:  t_PA2229 (ORF: BLASTX 176.0), t_PA0529 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGCAGATAGTCGTAAACGGTGTTTTCATAGGTAAAGTCGAAGAAACCTGGGGCGGATTGGTCAGCGCG 
ATCGACAAGCTGCCGGTCGAGCAGGAGTTCTGGCTGGGCCACGATGGCCTGCCCGGCGACGAACAGGCTGAC 
ATCCGCCACCACGGCGGCCTCGAGCGCGCTCTCCATCACTATCCCGCCGAGCACTACCGCTACTGGCGCAAG 
CGCCACCCGCTGAACCGCTGGCAACTGCCGGCGTTCGGCGAGAACATCTCGACCTACGGCATCACCGAAGCC 
GAGGTCTGCATCGGCGACCAGTTCCATTGGGGCGATGCCCTGCTGGAAGTCAGCCAGCCGCGTTCGCCCTGC 
TATCGCCAGGGCCAGCGCTGGAATCTTCCCGAGCTGCCCGACGAATTGCAGAGCGGCGGCCGCTGCGGCTGG 
TTCTATCGGGTCCTGCGCAGCGGCATGGTGACTCCCGGGGACGAGCTGAAGCTGGTCCAGCGGCATTACCCT 
GAACTGACCGTCGCCCGCCTGTTGCAGTGGTATTTCGGCGATCCCCTGGAGCCTCTCGGGTTGCGCCAGATG 
ATGGCCTGCGACGCGCTCTCCCAGCGTTGGCGCAAGACAGCGGCGAAACGCCTGTCCAGCGGCGTGGTGGAA 
GACTGGGGGCCGCGCCTGCGCGGACCGTCGGATTACCGGGAGCATGCCTCTTGA