ViewGene
Locus Name:
GeneID:
Location:

GeneID:3156
TrivialName: PA14_58540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58540
PAO1 Ortholog Locus:PA4511
Sequence Length:756
Protein Length:251
Start: 5213227
Stop: 5212472
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07899.1|AE004864_11 (AE004864) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 249/251 (99%), Positives = 249/251 (99%)
Sequence:
ATGAACGACACCGGCCGGCGTATCCTGCTCAACTGCGACATGGGCGAAAGCTTTGGCGCCTGGCGCATGGGC
GACGATGTCCACAGCATGCCGCTGGTTGACCAGGCCAACCTGGCTTGCGGCTTCCACGCTGGCGACCCGCTC
ACCATGCGGCGCGCGGTGGAGCTGGCGGTACGCCATGGCGTGAGCATCGGCGCGCACCCGGCCTATCCCGAC
CTGAGCGGCTTCGGCCGGCGCTCGCTGGCCTGCTCTGCCGAAGAGGTGCATGCCATGGTGCTGTACCAGATC
GGTGCGCTGGACGCTTTCTGCCGTTCCCTCGGTGCCCAGGTGGCCTATGTCAAGCCGCATGGCGCGCTGTAC
AACGACCTGGTCGGCGACGATGAGCTGCTGCGCGCCGTGCTCGACGCCTGCGCCGCCTATCGCAAGGACCTG
CCGCTGATGGTGCTGGCCCTGGCCGACAACGGCCGCGAGCTGGAACTGGCCGACGAGGCCGACGTGCCGCTG
CTGTTCGAGGCCTTCGCCGATCGCGCCTACCTGCCGGACGGCCGGCTGGCGCCGCGGCGGCTTGGCGGCGCG
GTGCATCACGATCCGCAGCGGATCATCGAACAGGCCCTGGCCATCGCCCGCGGCGAAGCCTTCCCCGACTAC
GACGGCAACCCGCTGCGCCTGACCGCCGACAGTCTTTGCGTGCATGGCGACAACCCGCAGTCGCTGGCGGTC
CTCCGGCGCCTGCGCGCGGCCCTGGACAGCCTGTGA
Translation:
MNDTGRRILLNCDMGESFGAWRMGDDVHSMPLVDQANLACGFHAGDPLTMRRAVELAVRHGVSIGAHPAYPD
LSGFGRRSLACSAEEVHAMVLYQIGALDAFCRSLGAQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKDL
PLMVLALADNGRELELADEADVPLLFEAFADRAYLPDGRLAPRRLGGAVHHDPQRIIEQALAIARGEAFPDY
DGNPLRLTADSLCVHGDNPQSLAVLRRLRAALDSL*
AnnotationID:3164GeneID:3156
AnnotatorUID: diggins
Modification Date/Time: 2006-02-06 22:10:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4511
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC62220.1| (AP005087) putative lactam utilization protein [Vibrio
           parahaemolyticus]
          Length = 251

 Score =  261 bits (666), Expect = 3e-69
 Identities = 128/245 (52%), Positives = 170/245 (69%), Gaps = 2/245 (0%)

>emb|CAB49901.1| (AJ248286) lamB-like lactam utilization related protein [Pyrococcus
           abyssi]
          Length = 255

 Score =  222 bits (565), Expect = 2e-57
 Identities = 110/243 (45%), Positives = 158/243 (65%), Gaps = 3/243 (1%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6315




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23457




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31555




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3156_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3156
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5078
                           PA4511_tr
                           translation of PA4511
                           251
                           99.20
                           99.20
                           0
                           1295.0
     

     
     
142529
                           gb|AAG07899.1|AE004864_11
                           (AE004864) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           251
                           99.20
                           99.20
                           0
                           1295.0
     

     
     
142530
                           gb|AAN70150.1|AE016654_7
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           258
                           61.24
                           72.86
                           7
                           818.0
     

     
     
5079
                           PA2112_tr
                           translation of PA2112
                           251
                           60.15
                           71.71
                           4
                           761.0
     

     
     
142531
                           gb|AAG05500.1|AE004638_10
                           (AE004638) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           251
                           60.15
                           71.71
                           4
                           761.0
     

     






      

          
GC ORFID: 46158How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4511Glimmer Score: 

          
Start: 4476906Stop: 4476151

          
Length: 756


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4511 translation of PA4511Homolog Bit Score 503.0

          
Other Homologs:  t_PA2112 (ORF: BLASTX 298.0), psyr_15may02_Scaffold2_revised_gene3358 (ORF: BLASTX 217.0), t_PA0492 (ORF: BLASTX 176.0), t_PA4511 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACACCGGCCGGCGTATCCTGCTCAACTGCGACATGGGCGAAAGCTTTGGCGCCTGGCGCATGGGC 
GACGATGTCCACAGCATGCCGCTGGTTGACCAGGCCAACCTGGCTTGCGGCTTCCACGCTGGCGACCCGCTC 
ACCATGCGGCGCGCGGTGGAGCTGGCGGTACGCCATGGCGTGAGCATCGGCGCGCACCCGGCCTATCCCGAC 
CTGAGCGGCTTCGGCCGGCGCTCGCTGGCCTGCTCTGCCGAAGAGGTGCATGCCATGGTGCTGTACCAGATC 
GGTGCGCTGGACGCTTTCTGCCGTTCCCTCGGTGCCCAGGTGGCCTATGTCAAGCCGCATGGCGCGCTGTAC 
AACGACCTGGTCGGCGACGATGAGCTGCTGCGCGCCGTGCTCGACGCCTGCGCCGCCTATCGCAAGGACCTG 
CCGCTGATGGTGCTGGCCCTGGCCGACAACGGCCGCGAGCTGGAACTGGCCGACGAGGCCGACGTGCCGCTG 
CTGTTCGAGGCCTTCGCCGATCGCGCCTACCTGCCGGACGGCCGGCTGGCGCCGCGGCGGCTTGGCGGCGCG 
GTGCATCACGATCCGCAGCGGATCATCGAACAGGCCCTGGCCATCGCCCGCGGCGAAGCCTTCCCCGACTAC 
GACGGCAACCCGCTGCGCCTGACCGCCGACAGTCTTTGCGTGCATGGCGACAACCCGCAGTCGCTGGCGGTC 
CTCCGGCGCCTGCGCGCGGCCCTGGACAGCCTGTGA