ViewGene
Locus Name:
GeneID:
Location:

GeneID:3155
TrivialName: PA14_26690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26690
PAO1 Ortholog Locus:PA2890
Sequence Length:795
Protein Length:264
Start: 2325854
Stop: 2325060
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06278.1|AE004715_4 (AE004715) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
Identities = 262/264 (99%), Positives = 263/264 (99%)
Sequence:
ATGAGCCTGCCGCATTGCGAGACCCTGCTGCTGGAACCCGTCGAGGGCGTCCTGCGGATCACCCTGAACCGC
CCGCAAAGCCGCAACGCCATGAGCCTGGCGATGGTCGGCGAACTGCGCGCGGTGCTCGCCGCCGTGCGCGAC
GACCGTAGCGTGCGGGCGCTGGTGCTGCGCGGCGCCGGCGGGCACTTCTGCGCCGGCGGCGACATCAAGGAC
ATGGCCGGTGCCCGCGCCGCCGGGGCGGAAGCCTACCGCACGCTGAACCGCGCCTTCGGCAGCCTGCTGGAG
GAAGCCCAGGCCGCCCCGCAACTGCTGGTGGCGCTGGTGGAAGGCGCGGTGCTCGGCGGCGGTTTCGGCCTG
GCCTGCGTGTCGGACGTAGCGATCGCCGCCGCCGATGCGCAGTTCGGCCTGCCGGAAACCAGCCTCGGCATT
CTCCCGGCGCAGATCGCGCCTTTCGTGGTCCGCCGCATCGGCCTGACCCAGGCCCGCCGCCTGGCCCTCACC
GCCGCCCGCTTCGACGGCCGCGAGGCGCTGCGCCTGGGCCTGGTGCATTTCTGCGaggCCGACGCCGATGCC
CTCGAACAGCGCCTGGAGGAAACCCTCGAGcaACTGCGCCGCTGCGCGCCGAACGCCAACGCCGCCACCAAG
GCCCTGCTGCTGGCCAGCGAAAGCGGCGAACTCGGCGCCCTGCTGGACGATGCGGCGCGCCAGTTCGCCGAA
GCGGTGGGCGGCGCCGAAGGCAGCGAAGGCACCCTGGCCTTCGTACAgAAACGCAAGCCGGTCTGGGCCCAG
TGA
Translation:
MSLPHCETLLLEPVEGVLRITLNRPQSRNAMSLAMVGELRAVLAAVRDDRSVRALVLRGAGGHFCAGGDIKD
MAGARAAGAEAYRTLNRAFGSLLEEAQAAPQLLVALVEGAVLGGGFGLACVSDVAIAAADAQFGLPETSLGI
LPAQIAPFVVRRIGLTQARRLALTAARFDGREALRLGLVHFCEADADALEQRLEETLEQLRRCAPNANAATK
ALLLASESGELGALLDDAARQFAEAVGGAEGSEGTLAFVQKRKPVWAQ*
AnnotationID:3163GeneID:3155
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 11:11:43
Gene Name:
Confidence Code:3
GeneProduct:putative enoyl-CoA hydratase
Cell Localization:()
Synonyms:PA2890
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative carnithine racemase
Functional Category Confidence Code:5
COGs:COG1024,pfam00378
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
CD-Length = 257 residues,  98.4% aligned
Score =  162 bits (412), Expect = 3e-41
Identities = 100/257 (38%), Positives = 135/257 (52%), Gaps = 5/257 (1%)

pfam00378, ECH, Enoyl-CoA hydratase/isomerase family.
CD-Length = 168 residues,  95.8% aligned
Score =  126 bits (317), Expect = 4e-30
Identities = 70/165 (42%), Positives = 93/165 (56%), Gaps = 5/165 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6313




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23455




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36159




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3155_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3155
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5077
                           PA2890_tr
                           translation of PA2890
                           264
                           99.24
                           99.62
                           0
                           1295.0
     

     
     
142528
                           gb|AAG06278.1|AE004715_4
                           (AE004715) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
                           264
                           99.24
                           99.62
                           0
                           1295.0
     

     






      

          
GC ORFID: 46157How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2890Glimmer Score: 

          
Start: 2628072Stop: 2628866

          
Length: 795


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2890 translation of PA2890Homolog Bit Score 503.0

          
Other Homologs:  t_PA2890 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTGCCGCATTGCGAGACCCTGCTGCTGGAACCCGTCGAGGGCGTCCTGCGGATCACCCTGAACCGC 
CCGCAAAGCCGCAACGCCATGAGCCTGGCGATGGTCGGCGAACTGCGCGCGGTGCTCGCCGCCGTGCGCGAC 
GACCGTAGCGTGCGGGCGCTGGTGCTGCGCGGCGCCGGCGGGCACTTCTGCGCCGGCGGCGACATCAAGGAC 
ATGGCCGGTGCCCGCGCCGCCGGGGCGGAAGCCTACCGCACGCTGAACCGCGCCTTCGGCAGCCTGCTGGAG 
GAAGCCCAGGCCGCCCCGCAACTGCTGGTGGCGCTGGTGGAAGGCGCGGTGCTCGGCGGCGGTTTCGGCCTG 
GCCTGCGTGTCGGACGTAGCGATCGCCGCCGCCGATGCGCAGTTCGGCCTGCCGGAAACCAGCCTCGGCATT 
CTCCCGGCGCAGATCGCGCCTTTCGTGGTCCGCCGCATCGGCCTGACCCAGGCCCGCCGCCTGGCCCTCACC 
GCCGCCCGCTTCGACGGCCGCGAGGCGCTGCGCCTGGGCCTGGTGCATTTCTGCGaggCCGACGCCGATGCC 
CTCGAACAGCGCCTGGAGGAAACCCTCGAGcaACTGCGCCGCTGCGCGCCGAACGCCAACGCCGCCACCAAG 
GCCCTGCTGCTGGCCAGCGAAAGCGGCGAACTCGGCGCCCTGCTGGACGATGCGGCGCGCCAGTTCGCCGAA 
GCGGTGGGCGGCGCCGAAGGCAGCGAAGGCACCCTGGCCTTCGTACAgAAACGCAAGCCGGTCTGGGCCCAG 
TGA