ViewGene
Locus Name:
GeneID:
Location:

GeneID:3154
TrivialName: PA14_33520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33520
PAO1 Ortholog Locus:PA2411
Sequence Length:765
Protein Length:254
Start: 2949248
Stop: 2950012
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05799.1|AE004668_9 (AE004668) probable thioesterase [Pseudomonas aeruginosa PAO1]
Identities = 250/254 (98%), Positives = 250/254 (98%)
Sequence:
GTGGGCGGTACGCCCGTACGGCTGTTCTGCCTGCCGTATTCCGGCGCCAGCGCCATGACCTACAGCCGCTGG
CGGCGCAAGCTGCCGGCCTGGCTGGCGGTGCGTTCGGTGGAGTTGCCGGGGCGCGGGGCGCGGATGGCCGAG
CCGTTGCAGACCGACCTGGCGAGCCTGGCGCAGCAACTGGCGCGCGAGCTGCACGACGAGGTCCGCCAGGGC
CCCTACGCGATGCTCGGCCACAGCCTCGGCGCCTTGCTCGCCTGCGAGGTGCTGTATGCCTTGCGCGAACTG
GGTTGCCCGACGCCGCTGGGGTTCTTCGCCTGCGGCACCGCGGCGCCGTCGCGACGCGCCGAGTATGACCGC
GGTTTCGCCGAACCGAAGAGCGACGCCGAGCTGATCGCCGACCTGCGCGACCTGCAAGGTACGCCGGAAGAG
GTGCTGGGCAACCGCGAGCTGATGAGCCTGACCCTGCCGATCCTGCGCGCTGATTTCCTGCTCTGCGGCAGC
TATCGTCACCAGCGGCGCCCGCCGCTGGCCTGTCCGATCCGAACGCTTGGCGGCAGGGAGGACAAGGCCAGC
GAGGAACAGTTGCTGGCCTGGGCCGAGGAAACCCGCAGCGGTTTCGGACTGGAGTTGTTCGACGGCGGGCAC
TTCTTCATCCATCAGCGCGAGGCCGAGGTGCTGGCGGTCGTCGAGCGCCAGGTCGAGGCCTGGCGCGCGGGG
CAGGGCGCCGCGGCGTTGGTGGTGGAGTCGGCGGCGATCTGCTGA
Translation:
MGGTPVRLFCLPYSGASAMTYSRWRRKLPAWLAVRSVELPGRGARMAEPLQTDLASLAQQLARELHDEVRQG
PYAMLGHSLGALLACEVLYALRELGCPTPLGFFACGTAAPSRRAEYDRGFAEPKSDAELIADLRDLQGTPEE
VLGNRELMSLTLPILRADFLLCGSYRHQRRPPLACPIRTLGGREDKASEEQLLAWAEETRSGFGLELFDGGH
FFIHQREAEVLAVVERQVEAWRAGQGAAALVVESAAIC*
AnnotationID:3162GeneID:3154
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 10:10:27
Gene Name:
Confidence Code:3
GeneProduct:putative thioesterase
Cell Localization:()
Synonyms:PA2411
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:putative pyoverdine synthetase, thioesterase component
Functional Category Confidence Code:5
COGs:COG3208
Secondary Functional Category(ies):antibiotic resistance and susceptibility
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69401.1|AE016576_11 (AE016788) thioesterase [Pseudomonas putida KT2440]
          Length = 239

 Score =  306 bits (783), Expect = 1e-82
 Identities = 153/236 (64%), Positives = 180/236 (76%), Gaps = 2/236 (0%)

>gb|AAL59667.2| (AF237701) putative thioesterase [Pseudomonas fluorescens]
          Length = 252

 Score =  258 bits (659), Expect = 2e-68
 Identities = 134/246 (54%), Positives = 166/246 (67%), Gaps = 7/246 (2%)

>gb|AAO55651.1| (AE016863) pyoverdine synthetase, thioesterase component
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 248

 Score =  250 bits (638), Expect = 6e-66
 Identities = 129/228 (56%), Positives = 161/228 (70%), Gaps = 3/228 (1%)








 
Structural Features:
COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 244 residues,  98.4% aligned
Score =  254 bits (650), Expect = 8e-69
Identities = 112/244 (45%), Positives = 145/244 (59%), Gaps = 7/244 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14749




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23453




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32955




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3154_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3154
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5075
                           PA2411_tr
                           translation of PA2411
                           254
                           98.42
                           98.42
                           0
                           1295.0
     

     
     
142519
                           gb|AAG05799.1|AE004668_9
                           (AE004668) probable thioesterase [Pseudomonas aeruginosa PAO1]
                           254
                           98.03
                           98.42
                           0
                           1292.0
     

     
     
142520
                           gb|AAN69401.1|AE016576_11
                           (AE016788) thioesterase [Pseudomonas putida KT2440]
                           255
                           60.00
                           70.58
                           17
                           782.0
     

     
     
142521
                           gb|AAL59667.2|
                           (AF237701) putative thioesterase [Pseudomonas fluorescens]
                           261
                           52.10
                           64.36
                           16
                           664.0
     

     
     
142522
                           gb|AAO55651.1|
                           (AE016863) pyoverdine synthetase, thioesterase component [Pseudomonas syringae pv. tomato str. DC3000]
                           270
                           50.00
                           61.85
                           38
                           642.0
     

     






      

          
GC ORFID: 46156How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2411Glimmer Score: 

          
Start: 2004668Stop: 2003904

          
Length: 765


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2411 translation of PA2411Homolog Bit Score 503.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene933 (ORF: BLASTX 250.0), t_PA2425 (ORF: BLASTX 211.0), t_PA2411 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGGCGGTACGCCCGTACGGCTGTTCTGCCTGCCGTATTCCGGCGCCAGCGCCATGACCTACAGCCGCTGG 
CGGCGCAAGCTGCCGGCCTGGCTGGCGGTGCGTTCGGTGGAGTTGCCGGGGCGCGGGGCGCGGATGGCCGAG 
CCGTTGCAGACCGACCTGGCGAGCCTGGCGCAGCAACTGGCGCGCGAGCTGCACGACGAGGTCCGCCAGGGC 
CCCTACGCGATGCTCGGCCACAGCCTCGGCGCCTTGCTCGCCTGCGAGGTGCTGTATGCCTTGCGCGAACTG 
GGTTGCCCGACGCCGCTGGGGTTCTTCGCCTGCGGCACCGCGGCGCCGTCGCGACGCGCCGAGTATGACCGC 
GGTTTCGCCGAACCGAAGAGCGACGCCGAGCTGATCGCCGACCTGCGCGACCTGCAAGGTACGCCGGAAGAG 
GTGCTGGGCAACCGCGAGCTGATGAGCCTGACCCTGCCGATCCTGCGCGCTGATTTCCTGCTCTGCGGCAGC 
TATCGTCACCAGCGGCGCCCGCCGCTGGCCTGTCCGATCCGAACGCTTGGCGGCAGGGAGGACAAGGCCAGC 
GAGGAACAGTTGCTGGCCTGGGCCGAGGAAACCCGCAGCGGTTTCGGACTGGAGTTGTTCGACGGCGGGCAC 
TTCTTCATCCATCAGCGCGAGGCCGAGGTGCTGGCGGTCGTCGAGCGCCAGGTCGAGGCCTGGCGCGCGGGG 
CAGGGCGCCGCGGCGTTGGTGGTGGAGTCGGCGGCGATCTGCTGA