ViewGene
Locus Name:
GeneID:
Location:

GeneID:3153
TrivialName: PA14_40280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40280
PAO1 Ortholog Locus:PA1872
Sequence Length:792
Protein Length:263
Start: 3598297
Stop: 3599088
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05261.1|AE004613_6 (AE004613) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 263/263 (100%), Positives = 263/263 (100%)
Sequence:
ATGAGCCTTTCCCCCGCCGATCTCAAGCAACTCCAGGCCGCCAAGAACCTGCTGGAGAACCCTGGACTCACC
GCGCAACTCACCAGCCTGCTGGGCACGCCGATCGAATACGGCCTGAAGAAGCTGCCGCGGAAGGTCAACGAG
AAGCTCGGTTCGGTGATCGAGGGAGCGCTGCTGAAAGTCGCCCGCTCGGCCACCGCCACTCTCCAGGAAAAC
GCCAGCGGTCAACCGGCGAACCGCCTGCATACCCTCGGCGCCGCCGTTTCCGGTGGCGTCGGCGGCTTCTTC
GGGCCGCTGGCGATGCTGGTCGAGGTGCCGGTCACCACCGGCATCATCTTCCGTTCCATCGCCGACATCGCG
CGCAGCGAGGGCGAGTCGATCAGGGACATGGACACCCTGATGGCCTGTATCGAAGTCTTCGCCCTCGGCGGC
AAATCCGCCTCGGACGACGCGTCGGAGTCCGGCTACTACGCGGTGCGTACGGCGCTGGCCCAGCAGGTCAAG
GCGGCCGCCGACTTCCTCGGCAAGGACGCCGGCAGCAAGAAGGCCGCGCCCATGCTCCTGGCCCTGGTGCGC
AAGGTCGCCGAGCGCCTGGGCGTGCAGTATTCGGAAAAGCTCGCGGCGCAGATCGTGCCCATCGTCGGCGCC
CTCGGCGGCGCGGCGATCAACACGGTGTTCATGAACCATTTCCAGGCCATGGCGCGCGGTCACTTCGTCGTC
CGCCGCCTGGAGCGCCACTACGGCAAGGATGTGGTTCGCGACGCCTACGCCCTGCTGCCACGGCGCGGCTGA
Translation:
MSLSPADLKQLQAAKNLLENPGLTAQLTSLLGTPIEYGLKKLPRKVNEKLGSVIEGALLKVARSATATLQEN
ASGQPANRLHTLGAAVSGGVGGFFGPLAMLVEVPVTTGIIFRSIADIARSEGESIRDMDTLMACIEVFALGG
KSASDDASESGYYAVRTALAQQVKAAADFLGKDAGSKKAAPMLLALVRKVAERLGVQYSEKLAAQIVPIVGA
LGGAAINTVFMNHFQAMARGHFVVRRLERHYGKDVVRDAYALLPRRG*
AnnotationID:3161GeneID:3153
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 07:07:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1872
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6309




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23451




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3153
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5074
                           PA1872_tr
                           translation of PA1872
                           263
                           99.99
                           99.99
                           0
                           1295.0
     

     
     
142514
                           gb|AAG05261.1|AE004613_6
                           (AE004613) hypothetical protein PA1872 [Pseudomonas aeruginosa PAO1]
                           263
                           99.99
                           99.99
                           0
                           1295.0
     

     
     
142515
                           gb|AAC12657.1|
                           (U68175) ORF1 [Pseudomonas aeruginosa]
                           263
                           99.99
                           99.99
                           0
                           1295.0
     

     
     
142516
                           gb|AAM35004.1|
                           (AE011634) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           266
                           51.87
                           68.42
                           6
                           666.0
     

     
     
142517
                           gb|AAM39404.1|
                           (AE012102) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           266
                           50.37
                           65.41
                           5
                           642.0
     

     






      

          
GC ORFID: 46155How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1872Glimmer Score: 

          
Start: 1355613Stop: 1354822

          
Length: 792


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1872 translation of PA1872Homolog Bit Score 503.0

          
Other Homologs:  t_PA1872 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTTTCCCCCGCCGATCTCAAGCAACTCCAGGCCGCCAAGAACCTGCTGGAGAACCCTGGACTCACC 
GCGCAACTCACCAGCCTGCTGGGCACGCCGATCGAATACGGCCTGAAGAAGCTGCCGCGGAAGGTCAACGAG 
AAGCTCGGTTCGGTGATCGAGGGAGCGCTGCTGAAAGTCGCCCGCTCGGCCACCGCCACTCTCCAGGAAAAC 
GCCAGCGGTCAACCGGCGAACCGCCTGCATACCCTCGGCGCCGCCGTTTCCGGTGGCGTCGGCGGCTTCTTC 
GGGCCGCTGGCGATGCTGGTCGAGGTGCCGGTCACCACCGGCATCATCTTCCGTTCCATCGCCGACATCGCG 
CGCAGCGAGGGCGAGTCGATCAGGGACATGGACACCCTGATGGCCTGTATCGAAGTCTTCGCCCTCGGCGGC 
AAATCCGCCTCGGACGACGCGTCGGAGTCCGGCTACTACGCGGTGCGTACGGCGCTGGCCCAGCAGGTCAAG 
GCGGCCGCCGACTTCCTCGGCAAGGACGCCGGCAGCAAGAAGGCCGCGCCCATGCTCCTGGCCCTGGTGCGC 
AAGGTCGCCGAGCGCCTGGGCGTGCAGTATTCGGAAAAGCTCGCGGCGCAGATCGTGCCCATCGTCGGCGCC 
CTCGGCGGCGCGGCGATCAACACGGTGTTCATGAACCATTTCCAGGCCATGGCGCGCGGTCACTTCGTCGTC 
CGCCGCCTGGAGCGCCACTACGGCAAGGATGTGGTTCGCGACGCCTACGCCCTGCTGCCACGGCGCGGCTGA