ViewGene

Locus Name:
GeneID:
Location:

GeneID:3152
TrivialName: PA14_46150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46150
PAO1 Ortholog Locus:PA1415
Sequence Length:729
Protein Length:242
Start: 4104523
Stop: 4105251
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04804.1|AE004571_3 (AE004571) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 240/242 (99%), Positives = 241/242 (99%)
Sequence:
ATGAGAATCGTCAGCCGCGACCGCTGGTTCGAAACCCGGCACTTCTACAACGGTATCAGCCTGATCCACGAG
CCCTACGTGCGCCCCTTCTATCGCTGCAACATGTGGCATGTCCAGGGCCGCGAGCGCGACGTGCTGGTGGAC
AGCGGCTCCGGTCTGGTCAGCCTGCGCGAGCAACTGCCCTGGCTCACCGAACGACCGCTGCTGGCGGTGGCC
AGCCACACCCACTTCGACCATATCGCCGGCCACCACGAATTCGCCGAGCGCCTGGCGCATCCGGCCGAGGCG
GAGATCCTCGCCGCGCCGGACGGCGACAACACCCTGGCGCGCGCCTATGTCGGCGACGAGATGTTCGAGGCG
CATCCGGAGTGCCCGCTGTGCTACGCCGAATACCGGGTGCGAGCAGCGCCGGCGACCCGCCTGATCGACGAA
GGCGACGTGCTCGATCTCGGCGACCGCGTGCTGCAGGTGCTGCACACGCCCGGGCACTCGCCGGGCGGCATC
AGCCTGTGGGAAGCGGCGACACAGACGCTGTTTTCCGGCGACATCGTCTACGACGGTCCGCTGGTCGAGGAC
GCCTATCATTCCAACCTCGACGACTATGCCGCCAGCCTCGCGCGCCTGCGCGAGCTACCGGTGCGCACCGTG
CATGGCGGGCATTTCGCGAGCTTTTCCGGGGAGCGTTTGAGGGAAATGATCGTCGCCTGGTTCAGGAACCAC
GATCGATAG
Translation:
MRIVSRDRWFETRHFYNGISLIHEPYVRPFYRCNMWHVQGRERDVLVDSGSGLVSLREQLPWLTERPLLAVA
SHTHFDHIAGHHEFAERLAHPAEAEILAAPDGDNTLARAYVGDEMFEAHPECPLCYAEYRVRAAPATRLIDE
GDVLDLGDRVLQVLHTPGHSPGGISLWEAATQTLFSGDIVYDGPLVEDAYHSNLDDYAASLARLRELPVRTV
HGGHFASFSGERLREMIVAWFRNHDR*
AnnotationID:3160GeneID:3152
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 06:06:14
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA1415
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative lactamase
Functional Category Confidence Code:5
COGs:COG0491,pfam00753
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0491, GloB, Zn-dependent hydrolases, including glyoxylases.
CD-Length = 252 residues,  87.7% aligned
Score = 78.4 bits (191), Expect = 7e-16 
Identities = 60/232 (25%), Positives = 83/232 (35%), Gaps = 20/232 (8%)

pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily.
CD-Length = 190 residues, 100.0% aligned
Score = 69.2 bits (167), Expect = 5e-13
Identities = 53/204 (25%), Positives = 74/204 (36%), Gaps = 25/204 (12%)
Genomic Context:
Comment:
ReferenceID:6307
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23449
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37391
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3152_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3152

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5073 PA1415_tr translation of PA1415 242 99.17 99.58 0 1294.0
142512 gb|AAG04804.1|AE004571_3 (AE004571) hypothetical protein PA1415 [Pseudomonas aeruginosa PAO1] 242 99.17 99.58 0 1294.0
142513 dbj|BAB47860.1| (AP002994) hypothetical protein [Mesorhizobium loti] 254 50.39 67.32 13 704.0
GC ORFID: 46154How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1415Glimmer Score:
Start: 849386Stop: 848658
Length: 729
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1415 translation of PA1415Homolog Bit Score 503.0
Other Homologs: t_PA1415 (ORF: GLIMMER)
GC ORF Sequence
ATGAGAATCGTCAGCCGCGACCGCTGGTTCGAAACCCGGCACTTCTACAACGGTATCAGCCTGATCCACGAG
CCCTACGTGCGCCCCTTCTATCGCTGCAACATGTGGCATGTCCAGGGCCGCGAGCGCGACGTGCTGGTGGAC
AGCGGCTCCGGTCTGGTCAGCCTGCGCGAGCAACTGCCCTGGCTCACCGAACGACCGCTGCTGGCGGTGGCC
AGCCACACCCACTTCGACCATATCGCCGGCCACCACGAATTCGCCGAGCGCCTGGCGCATCCGGCCGAGGCG
GAGATCCTCGCCGCGCCGGACGGCGACAACACCCTGGCGCGCGCCTATGTCGGCGACGAGATGTTCGAGGCG
CATCCGGAGTGCCCGCTGTGCTACGCCGAATACCGGGTGCGAGCAGCGCCGGCGACCCGCCTGATCGACGAA
GGCGACGTGCTCGATCTCGGCGACCGCGTGCTGCAGGTGCTGCACACGCCCGGGCACTCGCCGGGCGGCATC
AGCCTGTGGGAAGCGGCGACACAGACGCTGTTTTCCGGCGACATCGTCTACGACGGTCCGCTGGTCGAGGAC
GCCTATCATTCCAACCTCGACGACTATGCCGCCAGCCTCGCGCGCCTGCGCGAGCTACCGGTGCGCACCGTG
CATGGCGGGCATTTCGCGAGCTTTTCCGGGGAGCGTTTGAGGGAAATGATCGTCGCCTGGTTCAGGAACCAC
GATCGATAG