ViewGene
Locus Name:
GeneID:
Location:

GeneID:315
TrivialName: PA14_64510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64510
PAO1 Ortholog Locus:PA4879
Sequence Length:2070
Protein Length:689
Start: 5748057
Stop: 5745988
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08264.1|AE004901_6 (AE004901) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 684/689 (99%), Positives = 686/689 (99%)
Sequence:
ATGACGCGCGGCCGAAAGATCCTGACCTGGAGCCTCGCCAGCCTGGTCCTGCTGCTGGCGGCGTTGGTGGTG
TTCATCGCCACCTTCGACTGGAACCTGATCAAGCCCACCCTCAACGAAAAGGTCTCGGCGGCGCTGAACCGC
CCGTTCGCCATCAACGGCAACCTCGCCGTGGCCTGGCGCCGCGAGGAGGGCGAGGAAGGCTGGCGCGCCTGG
ATCCCCTGGCCGCGCTTCAGCGCCGAGGACATCACCCTCGGCAACCCGGAGTGGACGGCGGGCAAGACCAAG
GCGAGCGAGTTCGCCAGCCTGGAACGCATCGAATTCCGCCTCGCGCCGTTGCCGTTGCTCTGGCAGACCATC
CGCATTCCACAGATCAAGCTGACCCAGCCGCGCGCCGACCTCCTGCGCCTGGCCGACGGCCGCGCCAACTGG
GATTTCGACCTGCCTGCCAGCGACAGCGACGAGCCGTCCGCCTGGCAACTGGACATCCGCGAGATCGGTTTC
GACAAGGGTAGCGTCAGCCTCGACGACCAGCGTTTGAAGACCCGCCTGGAAGTGCTGGTCGACCCGCTCGGC
AAGCCGGTGCCGTTCGGCCAGTTGGCCGGCAAGGCGCTGGCCACGGGCGATGCGGCGGACGCCCAGGACTAT
GTGTTCGGCTGGAAGGTCAAGGGCACCTACAAGGGCCAGGCTCTGGCCGGCTCGGGCAAGGTCGGCGGGATG
CTGGCGTTGCAGGATGCGAGCAAGCCCTTCCCGCTACAGGCCGAGGTCAGTGCCGGCAGCACCCGTGCCGCG
GTGGTCGGCACCCTGACCGACCCGCTCAACCTCGGCGCCCTCGACCTGCGCCTGAAGCTGTCCGGGACCAGC
ATGGCCAATCTCTATCCGCTGACCGGCATCACCCTGCCGGACACTCCGGCCTACTCCACCGACGGACACCTG
CTGGCGCGGCTCAAGGAGGAGGGCGGCGCACTGTTCCGCTACGAGAACTTCAACGGCAAGGTCGGCGCCAGC
GACCTGCACGGCAGCCTGACCTTCGTCGCTCGCCAGCCTAGGCCGAAGCTGTCCGGCAAGCTGACCTCCGAG
CAACTGCGCTTCGCCGACCTCGGCCCGCTGATCGGCGCCGACAGCAATGCCGAAAAACAGAAGCGCGGGCAG
ACCAGCCGCCAGCCGGGCGACAAGGTGCTGCCGGTGGAGGAATTCCGTACCGAGCGCTGGCGCGACATGGAC
GCCGACGTGGAATTCACCGGCAAGCGTATCGTCCACAGCGACCAGTTGCCGATCAGCGACCTCTATACCCAT
CTGGTGCTCAACGACGGCCTGCTGCGCCTGGAGCCCCTGCGCTTCGGCGTGGCCGGCGGCAAGCTGGAGTCG
GACATCCGCCTGGATGGCGGCAAGCAGCCGATGCAGAGCCGAGTGAAGATGAGCGCGCGGGGCTTCAAGCTG
AAACAGTTGTTCCCCGGCTTCGCGCCGATGCAGACCAGCTTCGGCGAGCTGAACGGCGACGCCAGTCTCAGC
GGCAGCGGCAATTCGGTGGCGAAGATCCTCGGTGGCGCCGATGGCGAACTGAAGATGCTGATCAACGACGGT
GCGATCAGCAAAGGCCTGACCGAAATCGCCGGCCTCAATGTCGGAAACTACCTGGTGACCAAGCTGTTCGGC
GACGACGAGGTGAAGATCAACTGCGCGGCCGCCGACTTCGGCCTGCAGAAGGGCCTGATGACCAGCCGGCTG
TTCGTCTTCGACACCGAGAACGCGCTGGTCAACGTCGACGGCACGGTGAACTTCGCCAACGAGAAGCTCGAC
CTCGATGTCACCCCGCACAGCAAGGGCCTGCGGATCTTCTCGCTGCGCTCGCCGCTGTACGTGCGCGGCACC
TTCGCCAAGCCCGACGCCGGGGTCCACGCCGGGCCGCTGGTGGCGCGCGGCGCGGGAATGATCGCCCTCGGC
GTGGCGGTGGGCCCGGCGGCCAGCCTGCTGGCTCTGGTGGCGCCGAGCAAGAGCGACGACAACCAGTGCACC
GCCCTGCTGCAACGCATGCGCCAGCCGGCCAAGGCGCCGGCCGGCAAGCGCTGA
Translation:
MTRGRKILTWSLASLVLLLAALVVFIATFDWNLIKPTLNEKVSAALNRPFAINGNLAVAWRREEGEEGWRAW
IPWPRFSAEDITLGNPEWTAGKTKASEFASLERIEFRLAPLPLLWQTIRIPQIKLTQPRADLLRLADGRANW
DFDLPASDSDEPSAWQLDIREIGFDKGSVSLDDQRLKTRLEVLVDPLGKPVPFGQLAGKALATGDAADAQDY
VFGWKVKGTYKGQALAGSGKVGGMLALQDASKPFPLQAEVSAGSTRAAVVGTLTDPLNLGALDLRLKLSGTS
MANLYPLTGITLPDTPAYSTDGHLLARLKEEGGALFRYENFNGKVGASDLHGSLTFVARQPRPKLSGKLTSE
QLRFADLGPLIGADSNAEKQKRGQTSRQPGDKVLPVEEFRTERWRDMDADVEFTGKRIVHSDQLPISDLYTH
LVLNDGLLRLEPLRFGVAGGKLESDIRLDGGKQPMQSRVKMSARGFKLKQLFPGFAPMQTSFGELNGDASLS
GSGNSVAKILGGADGELKMLINDGAISKGLTEIAGLNVGNYLVTKLFGDDEVKINCAAADFGLQKGLMTSRL
FVFDTENALVNVDGTVNFANEKLDLDVTPHSKGLRIFSLRSPLYVRGTFAKPDAGVHAGPLVARGAGMIALG
VAVGPAASLLALVAPSKSDDNQCTALLQRMRQPAKAPAGKR*
AnnotationID:325GeneID:315
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 12:12:00
Gene Name:
Confidence Code:3
GeneProduct:putative exported protein
Cell Localization:()
Synonyms:yhjG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative inner membrane protein
Functional Category Confidence Code:5
COGs:pfam05170,COG2982
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE34516.1| (BX640449) exported protein, conserved [Bordetella bronchiseptica]
          Length = 702

 Score =  841 bits (2173), Expect = 0.0
 Identities = 420/706 (59%), Positives = 523/706 (74%), Gaps = 27/706 (3%)

>emb|CAE43111.1| (BX640419) exported protein, conserved [Bordetella pertussis]
          Length = 702

 Score =  835 bits (2156), Expect = 0.0
 Identities = 419/706 (59%), Positives = 521/706 (73%), Gaps = 27/706 (3%)








 
Structural Features:
pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the 
assembly of outer membrane proteins in Escherichia coli.
CD-Length = 691 residues, 100.0% aligned
Score =  687 bits (1773), Expect = 0.0
Identities = 275/691 (39%), Positives = 363/691 (52%), Gaps = 26/691 (3%)

COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis 
[Cell envelope biogenesis, outer membrane]
CD-Length = 648 residues,  98.8% aligned
Score =  512 bits (1320), Expect = 5e-146
Identities = 284/669 (42%), Positives = 353/669 (52%), Gaps = 47/669 (7%)







   
Genomic Context:






   
Comment:


















    ReferenceID:633




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17775




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35190




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:315_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:315
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
514
                           PA4879_tr
                           translation of PA4879
                           689
                           99.27
                           99.56
                           0
                           3508.0
     

     
     
25918
                           gb|AAG08264.1|AE004901_6
                           (AE004901) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           689
                           99.27
                           99.56
                           0
                           3508.0
     

     
     
25919
                           gb|AAN70426.1|AE016684_5
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           694
                           68.44
                           79.39
                           11
                           2464.0
     

     
     
25920
                           gb|AAO58335.1|
                           (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           695
                           64.89
                           77.26
                           13
                           2331.0
     

     
     
25921
                           emb|CAE34516.1|
                           (BX640449) exported protein, conserved [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           710
                           59.15
                           73.66
                           29
                           2191.0
     

     






      

          
GC ORFID: 43317How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4879Glimmer Score: 

          
Start: 5011738Stop: 5009669

          
Length: 2070


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4879 translation of PA4879Homolog Bit Score 1355.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5274 (ORF: BLASTX 896.0), t_PA4879 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCGCGGCCGAAAGATCCTGACCTGGAGCCTCGCCAGCCTGGTCCTGCTGCTGGCGGCGTTGGTGGTG 
TTCATCGCCACCTTCGACTGGAACCTGATCAAGCCCACCCTCAACGAAAAGGTCTCGGCGGCGCTGAACCGC 
CCGTTCGCCATCAACGGCAACCTCGCCGTGGCCTGGCGCCGCGAGGAGGGCGAGGAAGGCTGGCGCGCCTGG 
ATCCCCTGGCCGCGCTTCAGCGCCGAGGACATCACCCTCGGCAACCCGGAGTGGACGGCGGGCAAGACCAAG 
GCGAGCGAGTTCGCCAGCCTGGAACGCATCGAATTCCGCCTCGCGCCGTTGCCGTTGCTCTGGCAGACCATC 
CGCATTCCACAGATCAAGCTGACCCAGCCGCGCGCCGACCTCCTGCGCCTGGCCGACGGCCGCGCCAACTGG 
GATTTCGACCTGCCTGCCAGCGACAGCGACGAGCCGTCCGCCTGGCAACTGGACATCCGCGAGATCGGTTTC 
GACAAGGGTAGCGTCAGCCTCGACGACCAGCGTTTGAAGACCCGCCTGGAAGTGCTGGTCGACCCGCTCGGC 
AAGCCGGTGCCGTTCGGCCAGTTGGCCGGCAAGGCGCTGGCCACGGGCGATGCGGCGGACGCCCAGGACTAT 
GTGTTCGGCTGGAAGGTCAAGGGCACCTACAAGGGCCAGGCTCTGGCCGGCTCGGGCAAGGTCGGCGGGATG 
CTGGCGTTGCAGGATGCGAGCAAGCCCTTCCCGCTACAGGCCGAGGTCAGTGCCGGCAGCACCCGTGCCGCG 
GTGGTCGGCACCCTGACCGACCCGCTCAACCTCGGCGCCCTCGACCTGCGCCTGAAGCTGTCCGGGACCAGC 
ATGGCCAATCTCTATCCGCTGACCGGCATCACCCTGCCGGACACTCCGGCCTACTCCACCGACGGACACCTG 
CTGGCGCGGCTCAAGGAGGAGGGCGGCGCACTGTTCCGCTACGAGAACTTCAACGGCAAGGTCGGCGCCAGC 
GACCTGCACGGCAGCCTGACCTTCGTCGCTCGCCAGCCTAGGCCGAAGCTGTCCGGCAAGCTGACCTCCGAG 
CAACTGCGCTTCGCCGACCTCGGCCCGCTGATCGGCGCCGACAGCAATGCCGAAAAACAGAAGCGCGGGCAG 
ACCAGCCGCCAGCCGGGCGACAAGGTGCTGCCGGTGGAGGAATTCCGTACCGAGCGCTGGCGCGACATGGAC 
GCCGACGTGGAATTCACCGGCAAGCGTATCGTCCACAGCGACCAGTTGCCGATCAGCGACCTCTATACCCAT 
CTGGTGCTCAACGACGGCCTGCTGCGCCTGGAGCCCCTGCGCTTCGGCGTGGCCGGCGGCAAGCTGGAGTCG 
GACATCCGCCTGGATGGCGGCAAGCAGCCGATGCAGAGCCGAGTGAAGATGAGCGCGCGGGGCTTCAAGCTG 
AAACAGTTGTTCCCCGGCTTCGCGCCGATGCAGACCAGCTTCGGCGAGCTGAACGGCGACGCCAGTCTCAGC 
GGCAGCGGCAATTCGGTGGCGAAGATCCTCGGTGGCGCCGATGGCGAACTGAAGATGCTGATCAACGACGGT 
GCGATCAGCAAAGGCCTGACCGAAATCGCCGGCCTCAATGTCGGAAACTACCTGGTGACCAAGCTGTTCGGC 
GACGACGAGGTGAAGATCAACTGCGCGGCCGCCGACTTCGGCCTGCAGAAGGGCCTGATGACCAGCCGGCTG 
TTCGTCTTCGACACCGAGAACGCGCTGGTCAACGTCGACGGCACGGTGAACTTCGCCAACGAGAAGCTCGAC 
CTCGATGTCACCCCGCACAGCAAGGGCCTGCGGATCTTCTCGCTGCGCTCGCCGCTGTACGTGCGCGGCACC 
TTCGCCAAGCCCGACGCCGGGGTCCACGCCGGGCCGCTGGTGGCGCGCGGCGCGGGAATGATCGCCCTCGGC 
GTGGCGGTGGGCCCGGCGGCCAGCCTGCTGGCTCTGGTGGCGCCGAGCAAGAGCGACGACAACCAGTGCACC 
GCCCTGCTGCAACGCATGCGCCAGCCGGCCAAGGCGCCGGCCGGCAAGCGCTGA