ViewGene
Locus Name:
GeneID:
Location:

GeneID:3149
TrivialName: PA14_07260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07260
PAO1 Ortholog Locus:PA0558
Sequence Length:768
Protein Length:255
Start: 625582
Stop: 626349
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03947.1|AE004492_6 (AE004492) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 255/255 (100%), Positives = 255/255 (100%)
Sequence:
ATGTCGTCCGTACACAGCGCCGCCCAGCAAGGTTTCAGCGCCGAGGCCCAGCGTTACGCCCAGGGCCGGCCC
GAGTATCCGGAAGCGCTCTCCGACTGGTTGCGCGATGCCCTTGGCCTGCGTCCGCAGACCGTCGCGGTGGAC
CTCGGCGCCGGCACCGGCAAGTTCACCCGCCTGCTGGCCCGTACCGGCGCGCGGGTGGTCGCGGTGGAACCG
GTGGATGCGATGCGCGCGCAGCTCGCCGAAGCCTTGCCGCAGGTCCAGGCGCTGGCCGGTAGCGCCCAGTCG
ATTCCGTTGGCCAACGGCTTCGCCGACGCCCTGGTGTGCGCACAGGCCTTCCATTGGTTCGCCACCGTGGAG
GCGCTGGAGGAAATGCGCCGCGTGCTGACGGCGGAAGGCAGGCTGGGGCTGGTGTGGAACGTGCGTGACGAG
TCGCTGGATTGGGTCGCCGAGATCACCCGCATCATCACCCCCTACGAAGGCGATGCGCCGCGTTTCTACAAG
GGCGACTGGCGTCGGCCGTTCGAGCGTGCGCCCTTCGGACCGCTGCGACTTTCCACCTTCGCCTACGAGCAT
GTCGGCCCGCCGGAGCAGGTGATCGTCTCGCGCTTCCTTTCGGTGAGCTTCATCGCCGCCTTGCCGGAGACG
GAAAAGAACGCTGTGGCGGCGCAATTGCGCGAGCTGGTCGCCAGCCACCCGGCGCTCAAGGGGAAGGAGCAG
GTAGCGCTGCCCTATCGCACCGAGGCCTATCTGGCCGAGGCGCGCTAG
Translation:
MSSVHSAAQQGFSAEAQRYAQGRPEYPEALSDWLRDALGLRPQTVAVDLGAGTGKFTRLLARTGARVVAVEP
VDAMRAQLAEALPQVQALAGSAQSIPLANGFADALVCAQAFHWFATVEALEEMRRVLTAEGRLGLVWNVRDE
SLDWVAEITRIITPYEGDAPRFYKGDWRRPFERAPFGPLRLSTFAYEHVGPPEQVIVSRFLSVSFIAALPET
EKNAVAAQLRELVASHPALKGKEQVALPYRTEAYLAEAR*
AnnotationID:3157GeneID:3149
AnnotatorUID: diggins
Modification Date/Time: 2004-08-15 19:07:18
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6301




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23443




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33832




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3149_cdd.html


    		




 
URL:

















    ReferenceID:33833




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3149_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3149
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5070
                           PA0558_tr
                           translation of PA0558
                           255
                           99.99
                           99.99
                           0
                           1298.0
     

     
     
142412
                           gb|AAG03947.1|AE004492_6
                           (AE004492) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           255
                           99.99
                           99.99
                           0
                           1298.0
     

     
     
142413
                           gb|AAQ60418.1|
                           (AE016919) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           256
                           58.20
                           71.87
                           1
                           779.0
     

     
     
142414
                           emb|CAB42666.1|
                           (AL939116) hypothetical protein [Streptomyces coelicolor A3(2)]
                           272
                           31.98
                           43.38
                           29
                           268.0
     

     






      

          
GC ORFID: 46151How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0558Glimmer Score: 

          
Start: 6426924Stop: 6427691

          
Length: 768


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0558 translation of PA0558Homolog Bit Score 504.0

          
Other Homologs:  t_PA0558 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGTCCGTACACAGCGCCGCCCAGCAAGGTTTCAGCGCCGAGGCCCAGCGTTACGCCCAGGGCCGGCCC 
GAGTATCCGGAAGCGCTCTCCGACTGGTTGCGCGATGCCCTTGGCCTGCGTCCGCAGACCGTCGCGGTGGAC 
CTCGGCGCCGGCACCGGCAAGTTCACCCGCCTGCTGGCCCGTACCGGCGCGCGGGTGGTCGCGGTGGAACCG 
GTGGATGCGATGCGCGCGCAGCTCGCCGAAGCCTTGCCGCAGGTCCAGGCGCTGGCCGGTAGCGCCCAGTCG 
ATTCCGTTGGCCAACGGCTTCGCCGACGCCCTGGTGTGCGCACAGGCCTTCCATTGGTTCGCCACCGTGGAG 
GCGCTGGAGGAAATGCGCCGCGTGCTGACGGCGGAAGGCAGGCTGGGGCTGGTGTGGAACGTGCGTGACGAG 
TCGCTGGATTGGGTCGCCGAGATCACCCGCATCATCACCCCCTACGAAGGCGATGCGCCGCGTTTCTACAAG 
GGCGACTGGCGTCGGCCGTTCGAGCGTGCGCCCTTCGGACCGCTGCGACTTTCCACCTTCGCCTACGAGCAT 
GTCGGCCCGCCGGAGCAGGTGATCGTCTCGCGCTTCCTTTCGGTGAGCTTCATCGCCGCCTTGCCGGAGACG 
GAAAAGAACGCTGTGGCGGCGCAATTGCGCGAGCTGGTCGCCAGCCACCCGGCGCTCAAGGGGAAGGAGCAG 
GTAGCGCTGCCCTATCGCACCGAGGCCTATCTGGCCGAGGCGCGCTAG