ViewGene
Locus Name:
GeneID:
Location:

GeneID:3148
TrivialName: PA14_05890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05890
PAO1 Ortholog Locus:PA0452
Sequence Length:795
Protein Length:264
Start: 522237
Stop: 523031
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03841.1|AE004482_8 (AE004482) probable stomatin-like protein [Pseudomonas aeruginosa PAO1]
Identities = 264/264 (100%), Positives = 264/264 (100%)
Sequence:
ATGATGGGTATTTCCTATGGTTTGGCGATGTTGCTGGTGTTCCTCGCGCTGCTGCTGTTCAGCGCGCTGCGC
ATCCTCCGCGAGTACGAGCGTGGCGTGGTGTTCCAGCTCGGGCGGTTCTGGAAGGTCAAGGGGCCGGGGCTG
GTGCTGGTGATCCCGGCGATCCAGCAGATGGTGCGCATCGACCTGCGCACCATCGTCCTCGACGTGCCGCCG
CAGGATGTGATTTCCCGCGACAACGTTTCGGTGAAGGTCAACGCGGTGGTGTACTTCCGCGTGCTCGATCCG
CAGAAGGCGATCATCCAGGTGGAGAACTACCTGGCCGCCACCAGCCAATTGGCGCAGACCACCCTGCGCGCG
GTGCTGGGCAAGCACGAATTGGACGAGATGCTCGCCGAGCGCGAGCGCCTGAACCTGGATATCCAGCAGGTG
CTCGATGCGCAGACCGACGCCTGGGGCATCAAGGTGGCGAATGTGGAAATCAAGCACGTCGATCTCAACGAA
TCGATGGTCCGCGCCATCGCCCGGCAGGCCGAGGCGGAGCGTGAGCGCAGGGCCAAGGTGATCCATGCCGAG
GGCGAGCTGCAAGCCTCGGAGAAACTCATGCAGGCGGCGCAGATGCTCGGCCGGCAGAGTGGCGCCATGCAG
TTGCGCTACATGCAGACCCTCGGCGCGATCGCCGGCGACAAGAGTTCGACCATCGTCTTCCCGATGCCGATC
GAACTCTTCGGCGGCAAGTACGCAGGTGCCGCGCCGCGAAACGAAAAGGCCGCCGGAGAGGACGAGGAGAGG
TGA
Translation:
MMGISYGLAMLLVFLALLLFSALRILREYERGVVFQLGRFWKVKGPGLVLVIPAIQQMVRIDLRTIVLDVPP
QDVISRDNVSVKVNAVVYFRVLDPQKAIIQVENYLAATSQLAQTTLRAVLGKHELDEMLAERERLNLDIQQV
LDAQTDAWGIKVANVEIKHVDLNESMVRAIARQAEAERERRAKVIHAEGELQASEKLMQAAQMLGRQSGAMQ
LRYMQTLGAIAGDKSSTIVFPMPIELFGGKYAGAAPRNEKAAGEDEER*
AnnotationID:3156GeneID:3148
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 13:01:28
Gene Name:
Confidence Code:3
GeneProduct:putative stomatin-like transmembrane protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative prohibitin
Functional Category Confidence Code:5
COGs:pfam01145,smart00244
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65832.1|AE016211_10 (AE016774) SPFH domain/Band 7 family protein [Pseudomonas putida
           KT2440]
          Length = 248

 Score =  406 bits (1044), Expect = e-113
 Identities = 206/239 (86%), Positives = 226/239 (94%)

>emb|CAD14504.1| (AL646061) PUTATIVE STOMATIN-LIKE TRANSMEMBRANE PROTEIN [Ralstonia
           solanacearum]
          Length = 249

 Score =  377 bits (967), Expect = e-104
 Identities = 186/233 (79%), Positives = 216/233 (92%)

>emb|CAD86379.1| (BX321864) Band 7 protein [Nitrosomonas europaea ATCC 19718]
          Length = 261

 Score =  356 bits (913), Expect = 9e-98
 Identities = 178/235 (75%), Positives = 210/235 (89%)






 
Structural Features:
pfam01145, Band_7, SPFH domain / Band 7 family.
CD-Length = 174 residues,  99.4% aligned
Score =  181 bits (461), Expect = 7e-47
Identities = 91/173 (52%), Positives = 128/173 (73%)

smart00244, PHB, prohibitin homologues
CD-Length = 160 residues, 100.0% aligned
Score =  138 bits (350), Expect = 5e-34
Identities = 81/160 (50%), Positives = 111/160 (69%), Gaps = 2/160 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6299




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23441




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33774




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3148_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3148
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5069
                           PA0452_tr
                           translation of PA0452
                           264
                           99.99
                           99.99
                           0
                           1298.0
     

     
     
142375
                           gb|AAG03841.1|AE004482_8
                           (AE004482) probable stomatin-like protein [Pseudomonas aeruginosa PAO1]
                           264
                           99.99
                           99.99
                           0
                           1298.0
     

     
     
142376
                           gb|AAN65832.1|AE016211_10
                           (AE016774) SPFH domain/Band 7 family protein [Pseudomonas putida KT2440]
                           264
                           78.78
                           87.50
                           16
                           1039.0
     

     
     
142377
                           emb|CAD14504.1|
                           (AL646061) PUTATIVE STOMATIN-LIKE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           268
                           72.01
                           83.20
                           23
                           962.0
     

     
     
142379
                           gb|AAO90979.1|
                           (AE016964) SPFH domain/Band 7 family domain protein [Coxiella burnetii RSA 493]
                           267
                           67.41
                           82.02
                           21
                           905.0
     

     






      

          
GC ORFID: 46150How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0452Glimmer Score: 

          
Start: 6323579Stop: 6324373

          
Length: 795


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0452 translation of PA0452Homolog Bit Score 504.0

          
Other Homologs:  t_PA0452 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGGGTATTTCCTATGGTTTGGCGATGTTGCTGGTGTTCCTCGCGCTGCTGCTGTTCAGCGCGCTGCGC 
ATCCTCCGCGAGTACGAGCGTGGCGTGGTGTTCCAGCTCGGGCGGTTCTGGAAGGTCAAGGGGCCGGGGCTG 
GTGCTGGTGATCCCGGCGATCCAGCAGATGGTGCGCATCGACCTGCGCACCATCGTCCTCGACGTGCCGCCG 
CAGGATGTGATTTCCCGCGACAACGTTTCGGTGAAGGTCAACGCGGTGGTGTACTTCCGCGTGCTCGATCCG 
CAGAAGGCGATCATCCAGGTGGAGAACTACCTGGCCGCCACCAGCCAATTGGCGCAGACCACCCTGCGCGCG 
GTGCTGGGCAAGCACGAATTGGACGAGATGCTCGCCGAGCGCGAGCGCCTGAACCTGGATATCCAGCAGGTG 
CTCGATGCGCAGACCGACGCCTGGGGCATCAAGGTGGCGAATGTGGAAATCAAGCACGTCGATCTCAACGAA 
TCGATGGTCCGCGCCATCGCCCGGCAGGCCGAGGCGGAGCGTGAGCGCAGGGCCAAGGTGATCCATGCCGAG 
GGCGAGCTGCAAGCCTCGGAGAAACTCATGCAGGCGGCGCAGATGCTCGGCCGGCAGAGTGGCGCCATGCAG 
TTGCGCTACATGCAGACCCTCGGCGCGATCGCCGGCGACAAGAGTTCGACCATCGTCTTCCCGATGCCGATC 
GAACTCTTCGGCGGCAAGTACGCAGGTGCCGCGCCGCGAAACGAAAAGGCCGCCGGAGAGGACGAGGAGAGG 
TGA