ViewGene
Locus Name:
GeneID:
Location:

GeneID:3147
TrivialName: PA14_04430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04430
PAO1 Ortholog Locus:PA0339
Sequence Length:756
Protein Length:251
Start: 396964
Stop: 396209
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03728.1|AE004471_11 (AE004471) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 249/251 (99%), Positives = 250/251 (99%)
Sequence:
ATGTGCCTGATCGTCTTCGCCTGGCAACCGGGGCACGCCCTGCCGCTGCTGGTCGCCGCCAACCGTGACGAA
TTCTATGCCCGCCCGAGCCTGCCGCTGGCGGCCTGGGAGGACGCCGAGGGGGTATTCGCCGGACGCGACCTG
GAGGCCGGCGGCACCTGGCTGGGGCTCGGCCCGGCCGGCCGTTTCGCCGCCCTGACCAACGTCCGCGATCCG
TCGCAGGCTCTCGGCAAGCGCTCCCGTGGCGAACTGGTGGCGGACTTCCTGCGCGGCGGCGGCAACCCGGCC
GACTACCTGGCGCAGGTCGCCGGGCGCGCTGCGGACTATTCCGGCTTCAACCTGCTCATTGGCGATCGCCAT
CAGCTCTGGCACTACAACCCCCGCGTAGGGCCACCGCGCCTGCTGCCGGCGGGGGTCTACGGGCTGTCCAAC
GCGGCCCTCGATACGCCCTGGCCGAAGCTGCTCAAGGCTCGCGCCGCCCTCGCCGAGCGGCTTGCCGAGCCG
CATCCGCAGGCCCTGCTGGAGCTGCTGGCCGACGCAGCGCCGGCCGCCGACAGCCAGTTGCCGGATACCGGC
GTGGGTCTGGCCACGGAACGTCTGCTCTCCAGCGTGTTCATCGCCAGCCCGAGCTACGGCACTCGCGCCAGC
AGCGTCGTACGGGTACACGCCGACGGCACGCGGGAGATGATCGAGCGCAGCTTCGGGCCGTCCGGCGCCCGG
CTCGGCGAGGTCAGCCTGGTGCTGCCGCCAGGCTGA
Translation:
MCLIVFAWQPGHALPLLVAANRDEFYARPSLPLAAWEDAEGVFAGRDLEAGGTWLGLGPAGRFAALTNVRDP
SQALGKRSRGELVADFLRGGGNPADYLAQVAGRAADYSGFNLLIGDRHQLWHYNPRVGPPRLLPAGVYGLSN
AALDTPWPKLLKARAALAERLAEPHPQALLELLADAAPAADSQLPDTGVGLATERLLSSVFIASPSYGTRAS
SVVRVHADGTREMIERSFGPSGARLGEVSLVLPPG*
AnnotationID:3155GeneID:3147
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 17:05:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0339
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6297




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23439




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38073




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3147_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3147
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5068
                           PA0339_tr
                           translation of PA0339
                           251
                           99.20
                           99.60
                           0
                           1298.0
     

     
     
142365
                           gb|AAG03728.1|AE004471_11
                           (AE004471) hypothetical protein PA0339 [Pseudomonas aeruginosa PAO1]
                           251
                           99.20
                           99.60
                           0
                           1298.0
     

     
     
142366
                           gb|AAN70709.1|AE016714_7
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           251
                           68.52
                           77.29
                           3
                           876.0
     

     
     
142369
                           emb|CAE42927.1|
                           (BX640419) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           268
                           47.76
                           59.32
                           18
                           606.0
     

     
     
142370
                           gb|AAR34122.1|
                           (AE017209) conserved hypothetical protein [Geobacter sulfurreducens PCA]
                           264
                           47.34
                           60.22
                           21
                           562.0
     

     






      

          
GC ORFID: 46149How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0339Glimmer Score: 

          
Start: 6198306Stop: 6197551

          
Length: 756


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0339 translation of PA0339Homolog Bit Score 504.0

          
Other Homologs:  t_PA0339 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTGCCTGATCGTCTTCGCCTGGCAACCGGGGCACGCCCTGCCGCTGCTGGTCGCCGCCAACCGTGACGAA 
TTCTATGCCCGCCCGAGCCTGCCGCTGGCGGCCTGGGAGGACGCCGAGGGGGTATTCGCCGGACGCGACCTG 
GAGGCCGGCGGCACCTGGCTGGGGCTCGGCCCGGCCGGCCGTTTCGCCGCCCTGACCAACGTCCGCGATCCG 
TCGCAGGCTCTCGGCAAGCGCTCCCGTGGCGAACTGGTGGCGGACTTCCTGCGCGGCGGCGGCAACCCGGCC 
GACTACCTGGCGCAGGTCGCCGGGCGCGCTGCGGACTATTCCGGCTTCAACCTGCTCATTGGCGATCGCCAT 
CAGCTCTGGCACTACAACCCCCGCGTAGGGCCACCGCGCCTGCTGCCGGCGGGGGTCTACGGGCTGTCCAAC 
GCGGCCCTCGATACGCCCTGGCCGAAGCTGCTCAAGGCTCGCGCCGCCCTCGCCGAGCGGCTTGCCGAGCCG 
CATCCGCAGGCCCTGCTGGAGCTGCTGGCCGACGCAGCGCCGGCCGCCGACAGCCAGTTGCCGGATACCGGC 
GTGGGTCTGGCCACGGAACGTCTGCTCTCCAGCGTGTTCATCGCCAGCCCGAGCTACGGCACTCGCGCCAGC 
AGCGTCGTACGGGTACACGCCGACGGCACGCGGGAGATGATCGAGCGCAGCTTCGGGCCGTCCGGCGCCCGG 
CTCGGCGAGGTCAGCCTGGTGCTGCCGCCAGGCTGA