ViewGene

Locus Name:
GeneID:
Location:

GeneID:3146
TrivialName: PA14_67820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67820
PAO1 Ortholog Locus:PA5135
Sequence Length:774
Protein Length:257
Start: 6055751
Stop: 6056524
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08520.1|AE004926_10 (AE004926) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 255/257 (99%), Positives = 256/257 (99%)
Sequence:
ATGTCGGCGTTCCGCGTTGTCCTGCTGGGCCTGTGCCTGCTGTTCAACCAGGCCCAGGCCCGCCAGGACCCC
GTCCCCTACCAGCGCCCGCCGCTGCTGACCGTGGTCATCGACGACCTCGGGCAGAACCTGGCACGCGACCGC
CGGGTCCTCGACCTGCCCCCCGGCGTAACCCTGGCAATCATCCCGGAAACCCCGCATGCCGCCGAACTGGCC
CGCGAGGCGCACCAGCGCGGGCGCACGGTGATCCTGCACATGCCGATGGACCCGGCCGGCGGTCCCTACGCC
TGGCGGCCGGAGCTGACCCAGGAAGAGCGTGCGCGGCGGCTGGACGCGGCGCTGGCCAAGGTGCCGTTCGTG
CAGGGCCTGAACAACCACGAGGGCAGCCGCATGACCGCGGTGCGCCCGGCGATGGCCTGGCTCGCCGAGGAA
CTCCAGCGTCGCGGCCTGTACCTGGTCGACAGCCGCACCAGCGCCGCCACCGTGGCCGCCAGCGAGGCGCAG
CGGATCGGCCTGGCGAGCGTCTCGCGCGATGTGTTCCTCGACAACGAAGCCACACCGGAAGCGGTCTCCGCA
CAACTGCAGGCCGGCATCGCCCTGGCCCGCAAGCAGGGTTCGGCGTTGCTCATCGGCCACCCGCACAAGGCC
ACCCTCGACGTGCTGGCGCGGGAGCTGCCGAAGCTGCGCGCCCAGGGCATCGAGCTGGTACCGCCGCAGATG
CTCATCGGCGAGCGCGGCAACCGCAACGTCAACCCACGCCAGGCGCCGCACTGA
Translation:
MSAFRVVLLGLCLLFNQAQARQDPVPYQRPPLLTVVIDDLGQNLARDRRVLDLPPGVTLAIIPETPHAAELA
REAHQRGRTVILHMPMDPAGGPYAWRPELTQEERARRLDAALAKVPFVQGLNNHEGSRMTAVRPAMAWLAEE
LQRRGLYLVDSRTSAATVAASEAQRIGLASVSRDVFLDNEATPEAVSAQLQAGIALARKQGSALLIGHPHKA
TLDVLARELPKLRAQGIELVPPQMLIGERGNRNVNPRQAPH*
AnnotationID:3154GeneID:3146
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 12:12:11
Gene Name:
Confidence Code:3
GeneProduct:putative divergent polysaccharide deacetylas
Cell Localization:()
Synonyms:PA5135
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04748
Secondary Functional Category(ies):carbon compound catabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. 
CD-Length = 213 residues, 100.0% aligned
Score =  251 bits (642), Expect = 6e-68
Identities = 106/213 (49%), Positives = 135/213 (63%), Gaps = 4/213 (1%)
Genomic Context:
Comment:
ReferenceID:6295
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23437
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34899
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3146_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3146

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5067 PA5135_tr translation of PA5135 257 99.22 99.61 0 1297.0
142361 gb|AAG08520.1|AE004926_10 (AE004926) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 257 99.22 99.61 0 1297.0
142362 gb|AAO58756.1| (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 264 57.95 67.80 11 727.0
142363 gb|AAN70624.1|AE016705_4 (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440] 264 57.57 69.31 16 723.0
142364 gb|AAR35146.1| (AE017213) conserved hypothetical protein [Geobacter sulfurreducens PCA] 306 32.02 46.73 65 386.0
GC ORFID: 46148How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5135Glimmer Score:
Start: 5319436Stop: 5320209
Length: 774
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5135 translation of PA5135Homolog Bit Score 504.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6933 (ORF: BLASTX 284.0), t_PA5135 (ORF: GLIMMER)
GC ORF Sequence
ATGTCGGCGTTCCGCGTTGTCCTGCTGGGCCTGTGCCTGCTGTTCAACCAGGCCCAGGCCCGCCAGGACCCC
GTCCCCTACCAGCGCCCGCCGCTGCTGACCGTGGTCATCGACGACCTCGGGCAGAACCTGGCACGCGACCGC
CGGGTCCTCGACCTGCCCCCCGGCGTAACCCTGGCAATCATCCCGGAAACCCCGCATGCCGCCGAACTGGCC
CGCGAGGCGCACCAGCGCGGGCGCACGGTGATCCTGCACATGCCGATGGACCCGGCCGGCGGTCCCTACGCC
TGGCGGCCGGAGCTGACCCAGGAAGAGCGTGCGCGGCGGCTGGACGCGGCGCTGGCCAAGGTGCCGTTCGTG
CAGGGCCTGAACAACCACGAGGGCAGCCGCATGACCGCGGTGCGCCCGGCGATGGCCTGGCTCGCCGAGGAA
CTCCAGCGTCGCGGCCTGTACCTGGTCGACAGCCGCACCAGCGCCGCCACCGTGGCCGCCAGCGAGGCGCAG
CGGATCGGCCTGGCGAGCGTCTCGCGCGATGTGTTCCTCGACAACGAAGCCACACCGGAAGCGGTCTCCGCA
CAACTGCAGGCCGGCATCGCCCTGGCCCGCAAGCAGGGTTCGGCGTTGCTCATCGGCCACCCGCACAAGGCC
ACCCTCGACGTGCTGGCGCGGGAGCTGCCGAAGCTGCGCGCCCAGGGCATCGAGCTGGTACCGCCGCAGATG
CTCATCGGCGAGCGCGGCAACCGCAACGTCAACCCACGCCAGGCGCCGCACTGA