ViewGene
Locus Name:
GeneID:
Location:

GeneID:3145
TrivialName: PA14_62280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62280
PAO1 Ortholog Locus:PA4706
Sequence Length:768
Protein Length:255
Start: 5557967
Stop: 5557200
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08092.1|AE004884_10 (AE004884) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 255/255 (100%), Positives = 255/255 (100%)
Sequence:
ATGCTGCGCGTGGAGAACCTGTCCATCCGCCGTGGCGGAAAGACTGTACTGGAAGGCCTCGAGCTGGAGCTG
CGGCCTGGCGAGATGCTCGGCGTACTCGGCCCCAACGGCGCTGGCAAGAGCACCTTGCTTGGCGCTCTCTGT
GGCGAACTGGAGCCGGCCGAAGGGCTGGTGCTGCTCGACGAGCGCGGCCTCGACGACTGGCCGGGCGTCGCT
CGCGCGCAGCGCCTGGCGGTGCTGCCGCAGAGTTCGTCGCTGGGCTTCGCCTTTCCGGTGGAGGCGGTGGTC
GGCTTCGGTCGGCTGCCCCATTCCAGCGGCCGCGAGCGCGATGTGCAGATCGTCGCCGAGGCCTTGGCGGCG
GCCGACGCCAGCCATCTGGCCGGGCGCAGCTACCTGGCGCTGTCCGGCGGCGAACGCCAGCGCGTGCACCTG
GCGCGGGTGCTGGCGCAGCTGTGGCCGGGCGAGCCGGGGCAGGTGCTGCTGCTCGACGAACCGACCTCGGCG
CTCGACCCGCTGCACCAGCACACTACCCTGCAGGCGGTGCATGATTTCGCCCGCCGCGGTGCCTCGGTGCTG
GTGATCCTCCACGATCTCAACCTGGCCGCGCGCTATTGCGACCGCCTGCTGCTGTTGCAGAATGGTCGCCCG
CACCTGCTCGGTACGCCCGAGGAAGTCCTGCGCCCCGAGCCGTTGCGCGCGGTGTTCGGCCTCGAGGTCCTG
GTCCAGCGTCATCCCGAGCGAGGTCATCCGCTGATCGTCGCCCGTTGA
Translation:
MLRVENLSIRRGGKTVLEGLELELRPGEMLGVLGPNGAGKSTLLGALCGELEPAEGLVLLDERGLDDWPGVA
RAQRLAVLPQSSSLGFAFPVEAVVGFGRLPHSSGRERDVQIVAEALAAADASHLAGRSYLALSGGERQRVHL
ARVLAQLWPGEPGQVLLLDEPTSALDPLHQHTTLQAVHDFARRGASVLVILHDLNLAARYCDRLLLLQNGRP
HLLGTPEEVLRPEPLRAVFGLEVLVQRHPERGHPLIVAR*
AnnotationID:3153GeneID:3145
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 05:05:01
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:phuV
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative heme/hemin ABC transporter, ATP-binding protein
Functional Category Confidence Code:5
COGs:COG4559,COG1120
Secondary Functional Category(ies):coenzyme metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70260.1|AE016666_4 (AE016791) heme/hemin ABC transporter, ATP-binding protein
           [Pseudomonas putida KT2440]
          Length = 255

 Score =  346 bits (887), Expect = 8e-95
 Identities = 175/255 (68%), Positives = 198/255 (77%)

>emb|CAB61720.1| (AL939112) ABC transport protein, ATP-binding component.
           [Streptomyces coelicolor A3(2)]
          Length = 280

 Score =  208 bits (530), Expect = 2e-53
 Identities = 123/249 (49%), Positives = 157/249 (63%), Gaps = 7/249 (2%)






 
Structural Features:
COG4559, ABC-type_hemin_transport_system, ABC-type hemin transport system, 
ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 259 residues,  99.6% aligned
Score =  331 bits (851), Expect = 4e-92
Identities = 146/258 (56%), Positives = 179/258 (69%), Gaps = 3/258 (1%)

COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, 
ATPase components 
[Inorganic ion transport and metabolism / Coenzyme metabolism]
CD-Length = 258 residues,  98.1% aligned
Score =  266 bits (681), Expect = 2e-72
Identities = 122/258 (47%), Positives = 157/258 (60%), Gaps = 10/258 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6293




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23435




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37627




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3145_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3145
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5063
                           PA4706_tr
                           translation of PA4706
                           255
                           99.99
                           99.99
                           0
                           1297.0
     

     
     
142295
                           gb|AAC13285.1|
                           (AF055999) ATPase component [Pseudomonas aeruginosa]
                           255
                           99.99
                           99.99
                           0
                           1297.0
     

     
     
142294
                           gb|AAG08092.1|AE004884_10
                           (AE004884) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           255
                           99.99
                           99.99
                           0
                           1297.0
     

     
     
142296
                           gb|AAN70260.1|AE016666_4
                           (AE016791) heme/hemin ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           255
                           68.62
                           77.64
                           0
                           887.0
     

     
     
142297
                           dbj|BAC88519.1|
                           (AP006570) hemin ABC transporter ATP binding protein [Gloeobacter violaceus PCC 7421]
                           275
                           50.54
                           64.00
                           20
                           662.0
     

     






      

          
GC ORFID: 46147How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4706Glimmer Score: 

          
Start: 4821647Stop: 4820880

          
Length: 768


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4706 translation of PA4706Homolog Bit Score 504.0

          
Other Homologs:  t_PA4158 (ORF: BLASTX 168.0), t_PA2912 (ORF: BLASTX 152.0), t_PA4706 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGCGCGTGGAGAACCTGTCCATCCGCCGTGGCGGAAAGACTGTACTGGAAGGCCTCGAGCTGGAGCTG 
CGGCCTGGCGAGATGCTCGGCGTACTCGGCCCCAACGGCGCTGGCAAGAGCACCTTGCTTGGCGCTCTCTGT 
GGCGAACTGGAGCCGGCCGAAGGGCTGGTGCTGCTCGACGAGCGCGGCCTCGACGACTGGCCGGGCGTCGCT 
CGCGCGCAGCGCCTGGCGGTGCTGCCGCAGAGTTCGTCGCTGGGCTTCGCCTTTCCGGTGGAGGCGGTGGTC 
GGCTTCGGTCGGCTGCCCCATTCCAGCGGCCGCGAGCGCGATGTGCAGATCGTCGCCGAGGCCTTGGCGGCG 
GCCGACGCCAGCCATCTGGCCGGGCGCAGCTACCTGGCGCTGTCCGGCGGCGAACGCCAGCGCGTGCACCTG 
GCGCGGGTGCTGGCGCAGCTGTGGCCGGGCGAGCCGGGGCAGGTGCTGCTGCTCGACGAACCGACCTCGGCG 
CTCGACCCGCTGCACCAGCACACTACCCTGCAGGCGGTGCATGATTTCGCCCGCCGCGGTGCCTCGGTGCTG 
GTGATCCTCCACGATCTCAACCTGGCCGCGCGCTATTGCGACCGCCTGCTGCTGTTGCAGAATGGTCGCCCG 
CACCTGCTCGGTACGCCCGAGGAAGTCCTGCGCCCCGAGCCGTTGCGCGCGGTGTTCGGCCTCGAGGTCCTG 
GTCCAGCGTCATCCCGAGCGAGGTCATCCGCTGATCGTCGCCCGTTGA